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➞ Registration closed July 15.

BCC2020 is online, global, and affordable. The meeting and training are now done, and the CoFest is under way.

The 2020 Bioinformatics Community Conference brings together the Bioinformatics Open Source Conference (BOSC) and the Galaxy Community Conference into a single event featuring training, a meeting, and a CollaborationFest. Events run from July 17 through July 25, and is held in both the eastern and western hemispheres.

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Category: Live Q&A [clear filter]
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Sunday, July 19
 

10:30 EDT

West Keynote 1: How Open Source has Changed the World JointLincoln Stein

11:31 EDT

Cooperative bacteriophage genome annotation in the biologist-friendly Galaxy and Apollo platforms 🌀 GalaxyJolene Ramsey Digital Expression Explorer 2: a repository of 8 trillion uniformly processed RNA-seq reads and still counting 🍐 BOSCMark Ziemann

11:45 EDT

Community genome annotation integrates with Galaxy via Apollo providing greater integration and more functional annotation options 🌀 GalaxyNathan Dunn Targeted nanopore sequencing by real-time mapping of raw electrical signal with UNCALLED 🍐 BOSCSam Kovaka

11:50 EDT

THAPBI PICT -- a metabarcoding analysis pipeline developed as a Phytophthora ITS1 Classification Tool 🍐 BOSCPeter Cock Computational chemistry analysis using Galaxy: Exploring antigen-antibody binding patterns for MUC1-AR20.5 🌀 GalaxyChris Barnett

12:00 EDT

A reproducible workflow for amplicon-based microbial community analysis using the drake R package 🍐 BOSCRodrigo Ortega-Polo

12:05 EDT

Q & A 🌀 GalaxyDelphine Lariviere

12:10 EDT

Streamlining accessibility and computability of large-scale genomic datasets with the NHGRI genome data science Analysis, Visualization, and Informatics Lab-Space (ANVIL) 🍐 BOSCMichael Schatz Integrating and analyzing genotype, phenotype, and environmental data through CartograTree and Tripal Galaxy 🌀 GalaxyIrene Cobo

12:20 EDT

Q&A for session B1a 🍐 BOSCChris Fields

12:25 EDT

Tripal: an example of successful open-source distributed team development 🍐 BOSCMargaret Staton Automated real-time data analysis and visualizations for the SARS-CoV-2/Covid19 portal 🌀 GalaxyMarius van den Beek

12:30 EDT

BioThings Explorer: A platform for distributed knowledge integration across biomedical APIs 🍐 BOSCJiwen Xin

12:35 EDT

Don’t worry about data management - use Cenzontle 🍐 BOSCAsis Hallab

12:40 EDT

Q & A 🌀 GalaxyDelphine Lariviere Q&A for session B1b 🍐 BOSCChris Fields

14:01 EDT

Automated generation of training materials from markdown documents 🌀 GalaxyDelphine Lariviere

14:15 EDT

Enhancing rigor and reproducibility in biomedical research 🍐 BOSCJaqueline J. Brito Integrating refgenie and Galaxy for reference data management: a proposal for IDC 🌀 GalaxyIgnacio Eguinoa

14:20 EDT

Galaxy and its Tool Shed on Python 3: conclusion of a long journey 🌀 GalaxyNicola Soranzo Secondary analysis of publicly available omics data across almost 3 million publications 🍐 BOSCNicholas Darci-Maher

14:25 EDT

Q & A 🌀 GalaxyJennifer Harrow Q&A 🍐 BOSC

14:30 EDT

CrowdGO: Gene Ontology prediction using a meta approach 🍐 BOSCMaarten Reijnders Implementation of the IEEE-2791-2020 standard (BioCompute Objects) in Galaxy via workflow invocations 🌀 GalaxyCharles Hadley King

14:35 EDT

Goslin - A grammar of succinct lipid nomenclature 🍐 BOSCNils Hoffmann Porting the rCASC workflow for scRNA-Seq data analysis to Galaxy and the Laniakea Galaxy on-demand system 🌀 GalaxyPietro Mandreoli

14:40 EDT

Executable Research Article (ERA): Enrich a research paper with code and data 🍐 BOSCEmmy Tsang Galaxy, Selenium, and End-to-end Testing 🌀 GalaxyOleg Zharkov

14:55 EDT

Q & A 🌀 GalaxyJennifer Harrow Q&A 🍐 BOSC

22:30 EDT

East Keynote 1: Open minds bring open collaborations JointPrashanth N Suravajhala

23:31 EDT

Digital Expression Explorer 2: a repository of 8 trillion uniformly processed RNA-seq reads and still counting 🍐 BOSCMark Ziemann

23:50 EDT

Computational chemistry analysis using Galaxy: Exploring antigen-antibody binding patterns for MUC1-AR20.5 🌀 GalaxyChris Barnett

23:55 EDT

Please contribute to FASTQE so I don’t have to 🍐 BOSCAndrew Lonsdale
 
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