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➞ Registration closed July 15.

BCC2020 is online, global, and affordable. The meeting and training are now done, and the CoFest is under way.

The 2020 Bioinformatics Community Conference brings together the Bioinformatics Open Source Conference (BOSC) and the Galaxy Community Conference into a single event featuring training, a meeting, and a CollaborationFest. Events run from July 17 through July 25, and is held in both the eastern and western hemispheres.

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Type: Meeting-East [clear filter]
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Monday, July 20
 

00:00 EDT

A reproducible workflow for amplicon-based microbial community analysis using the drake R package 🍐 BOSCRodrigo Ortega-Polo

00:05 EDT

Q & A 🌀 GalaxyMaria Doyle SigBio-Shiny: A standalone interactive application for detecting biological significance on a set of genes 🍐 BOSCSangram Keshari Sahu

00:10 EDT

Streamlining accessibility and computability of large-scale genomic datasets with the NHGRI genome data science Analysis, Visualization, and Informatics Lab-Space (ANVIL) 🍐 BOSCMichael Schatz Integrating and analyzing genotype, phenotype, and environmental data through CartograTree and Tripal Galaxy 🌀 GalaxyIrene Cobo

00:15 EDT

A comprehensive benchmarking of WGS-based structural variant callers 🍐 BOSCVaruni Sarwal

00:20 EDT

Q&A for session B1a 🍐 BOSCMoni Muñoz-Torres

00:25 EDT

Tripal: an example of successful open-source distributed team development 🍐 BOSCMargaret Staton Automated real-time data analysis and visualizations for the SARS-CoV-2/Covid19 portal 🌀 GalaxyMarius van den Beek BOSC East Session 1b: Open data 🍐 BOSCMoni Muñoz-Torres

00:30 EDT

BioThings Explorer: A platform for distributed knowledge integration across biomedical APIs 🍐 BOSCJiwen Xin

00:35 EDT

Don’t worry about data management - use Cenzontle 🍐 BOSCAsis Hallab

00:40 EDT

Q & A 🌀 GalaxyMaria Doyle Q&A for session B1b 🍐 BOSCMoni Muñoz-Torres

01:00 EDT

eLife Innovation Sponsor Table JointEmmy Tsang GigaScience Sponsor Table JointKen Cho • Scott Edmunds • Laurie Goodman P1-01: : A composable rootless container system for genomic analysis pipelines 🍐 JointXu Yang P2-02: : Computational meta-analysis of transcriptome in Tetrology of Fallot reveals dysregulated hubs and pathways 🌀 JointSona Charles P2-07: : Data integration promises robust and faster discovery of COVID-19 drug targets 🍐 JointTyrone Chen P4-07: : GVL Demo: from Administrators to End-users 🌀 JointNuwan Goonasekera P6-01: : pyGenomeTracks: Reproducible plots for multivariate genomic data sets 🍐 JointLucille Lopez-Delisle P6-04: : SigBio-Shiny: A standalone interactive application for detecting biological significance on a set of genes 🍐 JointSangram Keshari Sahu P6-12: : Towards more FAIR research software 🍐 JointMateusz Kuzak Poster / Demo East Session 1 Joint

02:00 EDT

BOSC East Session 2: Reproducibility and standards 🍐 BOSCHeather Wiencko Galaxy Session 2: Extending the Galaxy Ecosystem 🌀 GalaxySimon Gladman

02:01 EDT

Automated generation of training materials from markdown documents 🌀 GalaxyDelphine Lariviere Bionitio: building better bioinformatics tools with batteries included 🍐 BOSCBernie Pope

02:15 EDT

Enhancing rigor and reproducibility in biomedical research 🍐 BOSCJaqueline J. Brito Integrating refgenie and Galaxy for reference data management: a proposal for IDC 🌀 GalaxyIgnacio Eguinoa

02:20 EDT

Galaxy and its Tool Shed on Python 3: conclusion of a long journey 🌀 GalaxyNicola Soranzo Secondary analysis of publicly available omics data across almost 3 million publications 🍐 BOSCNicholas Darci-Maher

02:25 EDT

Q & A 🌀 GalaxySimon Gladman Q&A 🍐 BOSCHeather Wiencko

02:30 EDT

CrowdGO: Gene Ontology prediction using a meta approach 🍐 BOSCMaarten Reijnders Implementation of the IEEE-2791-2020 standard (BioCompute Objects) in Galaxy via workflow invocations 🌀 GalaxyCharles Hadley King

02:35 EDT

Goslin - A grammar of succinct lipid nomenclature 🍐 BOSCNils Hoffmann Porting the rCASC workflow for scRNA-Seq data analysis to Galaxy and the Laniakea Galaxy on-demand system 🌀 GalaxyPietro Mandreoli

02:40 EDT

Executable Research Article (ERA): Enrich a research paper with code and data 🍐 BOSCEmmy Tsang Galaxy, Selenium, and End-to-end Testing 🌀 GalaxyOleg Zharkov

02:55 EDT

Q & A 🌀 GalaxySimon Gladman Q&A 🍐 BOSCHeather Wiencko

22:00 EDT

BCC2020 Conference Day 2: East Joint

22:01 EDT

Day 2 East Welcome JointGareth Price

22:15 EDT

East Keynote 2: How Open Source has Changed the World JointLincoln Stein

23:15 EDT

BOSC East Session 3: Building Open Source Communities (BOSC) 🍐 BOSCNomi Harris Galaxy East Session 3: Galaxy Administration 🌀 GalaxyNuwan Goonasekera

23:16 EDT

Building open source communities and empowering new contributors 🍐 BOSCYo Yehudi The cloud-native Galaxy: Galaxy on Kubernetes 🌀 GalaxyAlexandru Mahmoud

23:30 EDT

Codeathons as a tool for improving diversity in computer science 🍐 BOSCAllissa Dillman Custos: Enabling User Authentication via External Institutional Identities 🌀 GalaxyJuleen Graham

23:35 EDT

CyVerse Learning Institute’s foundational open science skills workshop 🍐 BOSCTyson Swetnam On-demand Galaxy with Laniakea: results and future perspectives 🌀 GalaxyMarco Antonio Tangaro

23:40 EDT

HiSCiAp and Human Cell Atlas Galaxy instance: User-friendly, scalable tools and workflows for single-cell analysis 🌀 GalaxyPablo Moreno Open Life Science: Empowering early career researchers to become open science leaders 🍐 BOSCBérénice Batut • Yo Yehudi • Malvika Sharan

23:55 EDT

Q & A 🌀 GalaxyNuwan Goonasekera Q&A 🍐 BOSCNomi Harris
 
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