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➞ Registration closed July 15.

BCC2020 is online, global, and affordable. The meeting and training are now done, and the CoFest is under way.

The 2020 Bioinformatics Community Conference brings together the Bioinformatics Open Source Conference (BOSC) and the Galaxy Community Conference into a single event featuring training, a meeting, and a CollaborationFest. Events run from July 17 through July 25, and is held in both the eastern and western hemispheres.

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Type: Meeting-West [clear filter]
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Monday, July 20
 

10:00 EDT

BCC2020 Conference Day 2: West Joint

10:01 EDT

Day 2 Welcome JointDave Clements • Morgan Taschuk

10:15 EDT

West Keynote 2: Open minds bring open collaborations JointPrashanth N Suravajhala

11:15 EDT

BOSC West Session 3: Building Open Source Communities (BOSC) 🍐 BOSCYo Yehudi Galaxy West Session 3: Galaxy Administration πŸŒ€ GalaxyJohn Chilton

11:16 EDT

Building open source communities and empowering new contributors 🍐 BOSCYo Yehudi The cloud-native Galaxy: Galaxy on Kubernetes πŸŒ€ GalaxyAlexandru Mahmoud

11:30 EDT

Codeathons as a tool for improving diversity in computer science 🍐 BOSCAllissa Dillman Custos: Enabling User Authentication via External Institutional Identities πŸŒ€ GalaxyJuleen Graham

11:35 EDT

CyVerse Learning Institute’s foundational open science skills workshop 🍐 BOSCTyson Swetnam On-demand Galaxy with Laniakea: results and future perspectives πŸŒ€ GalaxyMarco Antonio Tangaro

11:40 EDT

HiSCiAp and Human Cell Atlas Galaxy instance: User-friendly, scalable tools and workflows for single-cell analysis πŸŒ€ GalaxyPablo Moreno Open Life Science: Empowering early career researchers to become open science leaders 🍐 BOSCBΓ©rΓ©nice Batut • Yo Yehudi • Malvika Sharan

11:55 EDT

Q & A πŸŒ€ GalaxyJohn Chilton Q&A 🍐 BOSCYo Yehudi

12:15 EDT

Sponsor Session West JointDave Clements

12:20 EDT

AWS Gold Sponsor Talk: Scalable genomics data analysis in the cloud JointLee Pang

12:40 EDT

Software Sustainability Institute Gold Sponsor Talk: Most code is cr#p and that’s okay JointNeil Chue Hong

13:00 EDT

eLife Innovation Sponsor Table JointEmmy Tsang GigaScience Sponsor Table JointKen Cho • Scott Edmunds • Laurie Goodman P1-05: : Automated generation of training materials from markdown documents πŸŒ€ JointDelphine Lariviere P1-06: : Automated real-time data analysis and visualizations for the SARS-CoV-2/Covid19 portal πŸŒ€ JointMarius van den Beek P1-09: : BioViz Connect: Web application linking CyVerse cloud resources to genomic visualization in the Integrated Genome Browser 🍐 JointNowlan Freese P1-12: : Codeathons as a tool for improving diversity in computer science 🍐 JointAllissa Dillman P2-01: : Community genome annotation integrates with Galaxy via Apollo providing greater integration and more functional annotation options πŸŒ€ JointNathan Dunn P2-05: : CrowdGO: a wisdom of the crowd-based Gene Ontology prediction tool 🍐 JointMaarten Reijnders P3-03: : EDAM: the ontology of bioinformatics operations, topics, data, and formats (update 2020) 🍐 JointMatΓΊΕ‘ KalaΕ‘ P3-06: : eSPiGA: a population genomic analyses package with graphical interface 🍐 JointSebastian E. Ramos-Onsins P4-01: : Functionally Assembled Terrestrial Ecosystem Simulator (FATES) with Community Land Model in Galaxy πŸŒ€ JointAnne Fouilloux • Hui Tang • Sonya Geange P4-05: : Goslin - A grammar of succinct lipid nomenclature 🍐 JointNils Hoffmann P4-09: : HiSCiAp and Human Cell Atlas Galaxy instance: User-friendly, scalable tools and workflows for single-cell analysis πŸŒ€ JointPablo Moreno P4-11: : Implementation of the IEEE-2791-2020 standard (BioCompute Objects) in Galaxy via workflow invocations πŸŒ€ JointCharles Hadley King P5-01: : Integrating refgenie and Galaxy for reference data management: a proposal for IDC πŸŒ€ JointIgnacio Eguinoa P5-03: : Jasmine: Fast and accurate structural variant comparison across many individuals 🍐 JointMelanie Kirsche P5-08: : OpenBio.eu: An extrovert bioinformatics research object repository and workflow management system 🍐 JointAlexandros Kanterakis P5-09: : Pan-cancer Aberrant Pathway Activity Analysis (PAPAA): A Galaxy Operable Machine Learning-Based Pipeline. πŸŒ€ JointVijay Krishna Nagampalli P6-06: : sRNAflow: a tool for analysis of small RNA-seq data 🍐 JointPawel Zayakin P6-10: : The cloud-native Galaxy: Galaxy on Kubernetes πŸŒ€ JointNuwan Goonasekera • Enis Afgan • Alexandru Mahmoud P7-01: : ViPRA-Haplo: de novo reconstruction of viral populations using paired end sequencing data) 🍐 JointWeiling Li P7-03: : Visualization of gene regulation in endothelial cells that are programmed to human pluripotent stem cells and differentiated to endothelial or neuronal cells 🍐 JointLuke Trinity P7-07: Modern Data Visualization in Galaxy with Higlass πŸŒ€ JointAlex Ostrovsky P7-09: Leveraging machine learning techniques and microbiota data for accessible and reproducible biological classification πŸŒ€ JointJayadev Joshi Poster / Demo West Session 2 Joint

14:00 EDT

BOSC West Session 4a: Developer tools & libraries 🍐 BOSCKarsten Hokamp Galaxy West Session 4: The big picture πŸŒ€ GalaxyPeter van Heusden

14:01 EDT

Applying Pulsar: a democratised national and international remote compute network for Galaxy πŸŒ€ GalaxyGianmauro Cuccuru Shesmu: A bioinformatics orchestration tool 🍐 BOSCAndre Masella

14:15 EDT

SIMD Everywhere: portable implementations of SIMD intrinsics 🍐 BOSCEvan Nemerson Galaxy Community Update πŸŒ€ GalaxySimon Gladman • Gareth Price • BjΓΆrn GrΓΌning • Michael Schatz • Anton Nekrutenko • Jeremy Goecks • Enis Afgan • Dan Blankenberg

14:20 EDT

Biopython Project Update 2020 🍐 BOSCPeter Cock

14:25 EDT

Q&A for session B4a 🍐 BOSCKarsten Hokamp

14:29 EDT

BOSC West Session 4b: Visualization 🍐 BOSCKarsten Hokamp

14:30 EDT

Introducing App Store for IGB, a site for sharing and installing extensions for Integrated Genome Browser from BioViz.org 🍐 BOSCAnn Loraine

14:35 EDT

pyGenomeTracks: Reproducible plots for multivariate genomic data sets 🍐 BOSCLucille Lopez-Delisle

14:40 EDT

MultiQC updates: Visualising results from common bioinformatics tools 🍐 BOSCPhil Ewels

14:45 EDT

The Xena Geneset Viewer provides a visual comparison of pathways over public genomic cancer data 🍐 BOSCNathan Dunn

14:50 EDT

New features for GRNsight: a web application for visualizing models of small- to medium-scale gene regulatory networks 🍐 BOSCKam D. Dahlquist Q & A πŸŒ€ GalaxyPeter van Heusden

14:55 EDT

Q&A for session B4b 🍐 BOSCKarsten Hokamp
 
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