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BCC2020

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➞ Registration closed July 15.

BCC2020 is online, global, and affordable. The meeting and training are now done, and the CoFest is under way.

The 2020 Bioinformatics Community Conference brings together the Bioinformatics Open Source Conference (BOSC) and the Galaxy Community Conference into a single event featuring training, a meeting, and a CollaborationFest. Events run from July 17 through July 25, and is held in both the eastern and western hemispheres.

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00:15 EDT

Sponsor Session East JointGareth Price

00:20 EDT

AWS Gold Sponsor Talk: Scalable genomics data analysis in the cloud JointLee Pang

00:40 EDT

Software Sustainability Institute Gold Sponsor Talk: Most code is cr#p and that’s okay JointNeil Chue Hong

01:00 EDT

eLife Innovation Sponsor Table JointEmmy Tsang GigaScience Sponsor Table JointKen Cho • Scott Edmunds • Laurie Goodman P2-04: : CoxBase an online platform for epidemiological surveillance, visualization, analysis and typing of Coxiella burnetii genomic sequence 🍐 JointAkinyemi Mandela Fasemore P2-08: : Deep-EMSCAN: Deep Learning Approach to Recover Combination of Biologically Significant DNA Motifs 🍐 JointSonika Tyagi P3-03: : EDAM: the ontology of bioinformatics operations, topics, data, and formats (update 2020) 🍐 JointMatúš Kalaš P4-03: : Genome-wide variant analysis of dwarf soybean lines derived from normal F5 RILs obtained from crossing cultivated and wild soybean 🌀 JointNeha Roy P4-04: : Genpei: an implementation of GA4GH Workflow Execution Service Standard as a microservice 🍐 JointHirotaka Suetake P7-06: The comparative gene expression to delay flowering in the maturing mutation derived from the soybean crossing F8 RIL 🌀 JointChae Won Yu P7-07: Modern Data Visualization in Galaxy with Higlass 🌀 JointAlex Ostrovsky Poster / Demo East Session 2 Joint

02:00 EDT

BOSC East Session 4a: Developer tools & libraries 🍐 BOSCHeather Wiencko Galaxy East Session 4: The big picture 🌀 GalaxyHarpreet Singh

02:01 EDT

Applying Pulsar: a democratised national and international remote compute network for Galaxy 🌀 GalaxyGianmauro Cuccuru Shesmu: A bioinformatics orchestration tool 🍐 BOSCAndre Masella

02:15 EDT

SIMD Everywhere: portable implementations of SIMD intrinsics 🍐 BOSCEvan Nemerson Galaxy Community Update 🌀 GalaxySimon Gladman • Gareth Price • Michael Schatz • Björn Grüning • Anton Nekrutenko • Jeremy Goecks • Enis Afgan • Dan Blankenberg

02:20 EDT

Biopython Project Update 2020 🍐 BOSCPeter Cock

02:25 EDT

Q&A for session B4a 🍐 BOSCHeather Wiencko

02:30 EDT

Introducing App Store for IGB, a site for sharing and installing extensions for Integrated Genome Browser from BioViz.org 🍐 BOSCAnn Loraine BOSC East Session 4b: Visualization 🍐 BOSCHeather Wiencko

02:35 EDT

pyGenomeTracks: Reproducible plots for multivariate genomic data sets 🍐 BOSCLucille Lopez-Delisle

02:40 EDT

MultiQC updates: Visualising results from common bioinformatics tools 🍐 BOSCPhil Ewels

02:45 EDT

The Xena Geneset Viewer provides a visual comparison of pathways over public genomic cancer data 🍐 BOSCNathan Dunn

02:50 EDT

New features for GRNsight: a web application for visualizing models of small- to medium-scale gene regulatory networks 🍐 BOSCKam D. Dahlquist Q & A 🌀 GalaxyHarpreet Singh

02:55 EDT

Q&A for session B4b 🍐 BOSCHeather Wiencko

22:00 EDT

BOSC East Session 5: Workflow management systems 🍐 BOSCChris Fields Galaxy East Session 5: Galaxy beyond genomics 🌀 GalaxyAnshu Bhardwaj BCC2020 Conference Day 3: East Joint

22:01 EDT

Evolution of the Nextflow workflow management system 🍐 BOSCEvan Floden

22:02 EDT

Producing biodiversity indicators from citizen science projects: update of birds and bats monitoring schemes on Galaxy-E 🌀 GalaxyColine Royaux

22:15 EDT

Essential biodiversity variables on Galaxy: implementing the PAMPA application 🌀 GalaxyColine Royaux What’s new with nf-core: community-built bioinformatics pipelines 🍐 BOSCPhil Ewels

22:20 EDT

H3AGWAS: Portable GWAS workflows for African science 🍐 BOSCBrandenburg Jean-Tristan VINYL: Variant prIoritizatioN bY survivaL analysis 🌀 GalaxyMatteo Chiara

22:25 EDT

Evaluating customized database generation methods for metaproteomics analysis within the Galaxy platform. 🌀 GalaxySubina Mehta Q&A 🍐 BOSCChris Fields

22:30 EDT

An automated, accessible proteogenomic pipeline for high confidence detection and rigorous validation of novel peptide sequence variants in Galaxy-P 🌀 GalaxyAndrew T Rajcewski CWL-Airflow: a lightweight pipeline manager supporting Common Workflow Language 🍐 BOSCMichael Kotliar

22:35 EDT

Q & A 🌀 GalaxyAnshu Bhardwaj

22:40 EDT

Galaxy enables FAIR mass spectrometry imaging data analysis of urothelial carcinoma tissues 🌀 GalaxyMelanie Föll

22:45 EDT

Challenges in implementing Janis: A generator for CWL and WDL pipelines 🍐 BOSCMichael Franklin Democratizing DIA analysis on public cloud infrastructures via Galaxy 🌀 GalaxyMatthias Fahrner

22:50 EDT

EOSC-Nordic Climate Science Workbench roadmap 🌀 GalaxyAnne Fouilloux Rapidly creating portable pipelines with aCLImatise 🍐 BOSCMichael Milton

22:55 EDT

Functionally Assembled Terrestrial Ecosystem Simulator (FATES) with Community Land Model in Galaxy 🌀 GalaxyAnne Fouilloux • Hui Tang • Sonya Geange The all-new Genomics Virtual Lab 🍐 BOSCEnis Afgan

23:10 EDT

Q & A 🌀 GalaxyAnshu Bhardwaj Q&A 🍐 BOSCChris Fields

23:30 EDT

GigaScience Sponsor Table JointKen Cho • Scott Edmunds • Laurie Goodman P3-02: : ECRcentral: A central platform for early-career researchers 🍐 JointAziz Khan P3-11: : FASE: Finding Alternative Splicing Events and analysis of RNA-Sequencing Data. 🍐 JointHarsh Sharma P4-10: : Identification of differentially expressed genes between cultivar and weedy type in soybean plant 🌀 JointPrakash Basnet P7-04: : What’s new with nf-core: community-built bioinformatics pipelines 🍐 JointPhil Ewels P7-05: RNA-seq analyses of the hydrated and dehydrated leaves of the resurrection plant, Selaginella tamariscina 🌀 JointEunchae Kwon P7-08: Molecular Property Diagnostic Suite (MPDS): Development of Disease-Specific Web Portals Based on Galaxy Platform 🌀 JointAnamika Singh Gaur Poster / Demo East Session 3 Joint

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