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➞ Registration closed July 15.

BCC2020 is online, global, and affordable. The meeting and training are now done, and the CoFest is under way.

The 2020 Bioinformatics Community Conference brings together the Bioinformatics Open Source Conference (BOSC) and the Galaxy Community Conference into a single event featuring training, a meeting, and a CollaborationFest. Events run from July 17 through July 25, and is held in both the eastern and western hemispheres.

avatar for Rajul Jain

Rajul Jain

Dayalbagh Educational Institute
Research Scholar
Agra, India
Websitedei.ac.in
Thursday, July 16
 

11:00 EDT

Pre-BCC Open House! West
 
Friday, July 17
 

03:00 EDT

Pre-BCC Open House! East

09:00 EDT

West Training 1 Joint

09:01 EDT

Adding Fun(ction) to Microbiome Analysis: Metatranscriptomics and Metaproteomics Workflows in Galaxy Training ETim Griffin • James Johnson • Saskia Hiltemann • Pratik Jagtap • Subina Mehta

12:16 EDT

Scaling genomic analysis with Glow and Apache Spark Training BHenry Davidge • Karen Feng • Rishi Ghose • Michael Shtelma • Frank Nothaft • Kiavash Kianfar • Amir Kermany • Will Brandler

18:00 EDT

Interregnum Joint

21:00 EDT

East Training 1 Joint

21:01 EDT

Introduction to Using Galaxy Training BJennifer Hillman-Jackson • Igor Makunin
 
Saturday, July 18
 

00:16 EDT

From stars to constellations: Scaling analyses in Galaxy Training CMaria Doyle • Marius van den Beek

03:31 EDT

Import, handle, visualize and analyze biodiversity data in Galaxy Training CYvan Le Bras

06:00 EDT

Interregnum Joint

09:01 EDT

Train the Galaxy Trainer Training ESaskia Hiltemann • Delphine Lariviere • Helena Rasche

21:01 EDT

Train the Galaxy Trainer Training CGareth Price • Maria Doyle • Simon Gladman
 
Sunday, July 19
 

00:16 EDT

Introduction to RNA-Seq Analysis with Galaxy Training DGareth Price

03:31 EDT

Processing of Single Cell RNA-Seq Data with Galaxy Training ABjorn Gruning • Mehmet Tekman • Hans-Rudolf Hotz

22:00 EDT

BCC2020 Conference Day 1: East Joint

22:01 EDT

Welcome JointNomi Harris • Gareth Price

22:30 EDT

East Keynote 1: Open minds bring open collaborations JointPrashanth Suravajhala

23:30 EDT

BOSC East Session 1a: Sequencing & analysis 🍐 BOSCMoni Muñoz-Torres Galaxy East Session 1: Applications and use cases 🌀 GalaxyMaria Doyle

23:31 EDT

Cooperative bacteriophage genome annotation in the biologist-friendly Galaxy and Apollo platforms 🌀 GalaxyJolene Ramsey Digital Expression Explorer 2: a repository of 8 trillion uniformly processed RNA-seq reads and still counting 🍐 BOSCMark Ziemann

23:45 EDT

Community genome annotation integrates with Galaxy via Apollo providing greater integration and more functional annotation options 🌀 GalaxyNathan Dunn Targeted nanopore sequencing by real-time mapping of raw electrical signal with UNCALLED 🍐 BOSCSam Kovaka

23:50 EDT

Computational chemistry analysis using Galaxy: Exploring antigen-antibody binding patterns for MUC1-AR20.5 🌀 GalaxyChris Barnett THAPBI PICT -- a metabarcoding analysis pipeline developed as a Phytophthora ITS1 Classification Tool 🍐 BOSCPeter Cock

23:55 EDT

Please contribute to FASTQE so I don’t have to 🍐 BOSCAndrew Lonsdale
 
Monday, July 20
 

00:00 EDT

A reproducible workflow for amplicon-based microbial community analysis using the drake R package 🍐 BOSCRodrigo Ortega-Polo

00:05 EDT

Q & A 🌀 GalaxyMaria Doyle SigBio-Shiny: A standalone interactive application for detecting biological significance on a set of genes 🍐 BOSCSangram Keshari Sahu

00:10 EDT

Integrating and analyzing genotype, phenotype, and environmental data through CartograTree and Tripal Galaxy 🌀 GalaxyIrene Cobo Streamlining accessibility and computability of large-scale genomic datasets with the NHGRI genome data science Analysis, Visualization, and Informatics Lab-Space (ANVIL) 🍐 BOSCMichael Schatz

00:15 EDT

A comprehensive benchmarking of WGS-based structural variant callers 🍐 BOSCVaruni Sarwal

00:20 EDT

Q&A for session B1a 🍐 BOSCMoni Muñoz-Torres

00:25 EDT

Automated real-time data analysis and visualizations for the SARS-CoV-2/Covid19 portal 🌀 GalaxyMarius van den Beek BOSC East Session 1b: Open data 🍐 BOSCMoni Muñoz-Torres Tripal: an example of successful open-source distributed team development 🍐 BOSCMargaret Staton

00:30 EDT

BioThings Explorer: A platform for distributed knowledge integration across biomedical APIs 🍐 BOSCJiwen Xin

00:35 EDT

Don’t worry about data management - use Cenzontle 🍐 BOSCAsis Hallab

00:40 EDT

Q & A 🌀 GalaxyMaria Doyle Q&A for session B1b 🍐 BOSCMoni Muñoz-Torres

01:00 EDT

P1-01: : A composable rootless container system for genomic analysis pipelines 🍐 JointXu Yang P2-02: : Computational meta-analysis of transcriptome in Tetrology of Fallot reveals dysregulated hubs and pathways 🌀 JointSona Charles P2-07: : Data integration promises robust and faster discovery of COVID-19 drug targets 🍐 JointTyrone Chen P4-07: : GVL Demo: from Administrators to End-users 🌀 JointNuwan Goonasekera P6-01: : pyGenomeTracks: Reproducible plots for multivariate genomic data sets 🍐 JointLucille Delisle P6-04: : SigBio-Shiny: A standalone interactive application for detecting biological significance on a set of genes 🍐 JointSangram Keshari Sahu P6-12: : Towards more FAIR research software 🍐 JointMateusz Kuzak Poster / Demo East Session 1 Joint

02:00 EDT

BOSC East Session 2: Reproducibility and standards 🍐 BOSCHeather Wiencko Galaxy Session 2: Extending the Galaxy Ecosystem 🌀 GalaxySimon Gladman

02:01 EDT

Automated generation of training materials from markdown documents 🌀 GalaxyDelphine Lariviere Bionitio: building better bioinformatics tools with batteries included 🍐 BOSCBernie Pope

02:15 EDT

Enhancing rigor and reproducibility in biomedical research 🍐 BOSCJaqueline J. Brito Integrating refgenie and Galaxy for reference data management: a proposal for IDC 🌀 GalaxyIgnacio Eguinoa

02:20 EDT

Galaxy and its Tool Shed on Python 3: conclusion of a long journey 🌀 GalaxyNicola Soranzo Secondary analysis of publicly available omics data across almost 3 million publications 🍐 BOSCNicholas Darci-Maher

02:25 EDT

Q & A 🌀 GalaxySimon Gladman Q&A 🍐 BOSCHeather Wiencko

02:30 EDT

CrowdGO: Gene Ontology prediction using a meta approach 🍐 BOSCMaarten Reijnders Implementation of the IEEE-2791-2020 standard (BioCompute Objects) in Galaxy via workflow invocations 🌀 GalaxyCharles Hadley King

02:35 EDT

Goslin - A grammar of succinct lipid nomenclature 🍐 BOSCNils Hoffmann Porting the rCASC workflow for scRNA-Seq data analysis to Galaxy and the Laniakea Galaxy on-demand system 🌀 Galaxypietro mandreoli

02:40 EDT

Executable Research Article (ERA): Enrich a research paper with code and data 🍐 BOSCEmmy Tsang Galaxy, Selenium, and End-to-end Testing 🌀 GalaxyOleg Zharkov

02:55 EDT

Q & A 🌀 GalaxySimon Gladman Q&A 🍐 BOSCHeather Wiencko

03:15 EDT

Birds of a Feather (BOFs) Joint

05:00 EDT

Galaxy Social East! JointGareth Price

09:00 EDT

Birds of a Feather (BOFs) Joint BoF: A code of conduct for the OBF JointBastian Greshake Tzovaras • Malvika Sharan BoF: Celestial Masses: Galaxy for mass spectrometry-based research JointTim Griffin • Pratik Jagtap • Yves Vandenbrouck • Oliver Schilling BoF: Computational Immunoinformatics Worflows Over Galaxy Server JointAmbarish Kumar BoF: Galaxy-India: Launch and Outreach Plans JointAnshu Bhardwaj • Harpreet Singh

15:15 EDT

Birds of a Feather (BOFs) Joint BoF: Computational Biology in the Cloud JointLydia Fleischmann • Yuriy Skripchenko

17:00 EDT

BOSC Happy Hour West! Joint

21:00 EDT

Birds of a Feather (BOFs) Joint BoF: Celestial Masses: Galaxy for mass spectrometry-based research JointPratik Jagtap BoF: Computational Immunoinformatics Worflows Over Galaxy Server JointAmbarish Kumar

22:00 EDT

BCC2020 Conference Day 2: East Joint

22:01 EDT

Day 2 East Welcome JointGareth Price

22:15 EDT

East Keynote 2: How Open Source has Changed the World JointLincoln Stein

23:40 EDT

Open Life Science: Empowering early career researchers to become open science leaders 🍐 BOSCBérénice Batut • Yo Yehudi • Malvika Sharan
 
Tuesday, July 21
 

00:15 EDT

Sponsor Session East JointGareth Price

00:20 EDT

AWS Gold Sponsor Talk: Scalable genomics data analysis in the cloud JointLee Pang

00:40 EDT

Software Sustainability Institute Gold Sponsor Talk: Most code is cr#p and that’s okay JointNeil Chue Hong

01:00 EDT

P2-04: : CoxBase an online platform for epidemiological surveillance, visualization, analysis and typing of Coxiella burnetii genomic sequence 🍐 JointAkinyemi Mandela Fasemore P2-08: : Deep-EMSCAN: Deep Learning Approach to Recover Combination of Biologically Significant DNA Motifs 🍐 JointSonika Tyagi P4-03: : Genome-wide variant analysis of dwarf soybean lines derived from normal F5 RILs obtained from crossing cultivated and wild soybean 🌀 JointNeha Roy P4-04: : Genpei: an implementation of GA4GH Workflow Execution Service Standard as a microservice 🍐 JointHirotaka Suetake P7-06: The comparative gene expression to delay flowering in the maturing mutation derived from the soybean crossing F8 RIL 🌀 JointChae Won Yu P7-07: Modern Data Visualization in Galaxy with Higlass 🌀 JointAlex Ostrovsky Poster / Demo East Session 2 Joint

02:00 EDT

BOSC East Session 4a: Developer tools & libraries 🍐 BOSCHeather Wiencko Galaxy East Session 4: The big picture 🌀 GalaxyHarpreet Singh

02:01 EDT

Applying Pulsar: a democratised national and international remote compute network for Galaxy 🌀 GalaxyGianmauro Cuccuru Shesmu: A bioinformatics orchestration tool 🍐 BOSCAndre Masella

02:15 EDT

Galaxy Community Update 🌀 GalaxySimon Gladman • Gareth Price • Michael Schatz • Bjorn Gruning • Anton Nekrutenko • Jeremy Goecks • Enis Afgan • Dan Blankenberg SIMD Everywhere: portable implementations of SIMD intrinsics 🍐 BOSCEvan Nemerson

02:20 EDT

Biopython Project Update 2020 🍐 BOSCPeter Cock

02:25 EDT

Q&A for session B4a 🍐 BOSCHeather Wiencko

02:30 EDT

BOSC East Session 4b: Visualization 🍐 BOSCHeather Wiencko Introducing App Store for IGB, a site for sharing and installing extensions for Integrated Genome Browser from BioViz.org 🍐 BOSCAnn Loraine

02:35 EDT

pyGenomeTracks: Reproducible plots for multivariate genomic data sets 🍐 BOSCLucille Delisle

02:40 EDT

MultiQC updates: Visualising results from common bioinformatics tools 🍐 BOSCPhil Ewels

02:45 EDT

The Xena Geneset Viewer provides a visual comparison of pathways over public genomic cancer data 🍐 BOSCNathan Dunn

02:50 EDT

New features for GRNsight: a web application for visualizing models of small- to medium-scale gene regulatory networks 🍐 BOSCKam D. Dahlquist Q & A 🌀 GalaxyHarpreet Singh

02:55 EDT

Q&A for session B4b 🍐 BOSCHeather Wiencko

03:15 EDT

Birds of a Feather (BOFs) Joint BoF: Galaxy-India: Launch and Outreach Plans JointHarpreet Singh • Anshu Bhardwaj

09:00 EDT

Birds of a Feather (BOFs) Joint BoF: FAIR Computational Workflows JointIgnacio Eguinoa

21:00 EDT

Birds of a Feather (BOFs) Joint BoF: IWC - Intergalactic Workflow Commission JointBrad Langhorst

22:00 EDT

BCC2020 Conference Day 3: East Joint BOSC East Session 5: Workflow management systems 🍐 BOSCChris Fields Galaxy East Session 5: Galaxy beyond genomics 🌀 GalaxyAnshu Bhardwaj

22:01 EDT

Evolution of the Nextflow workflow management system 🍐 BOSCEvan Floden

22:02 EDT

Producing biodiversity indicators from citizen science projects: update of birds and bats monitoring schemes on Galaxy-E 🌀 GalaxyColine Royaux

22:15 EDT

Essential biodiversity variables on Galaxy: implementing the PAMPA application 🌀 GalaxyColine Royaux What’s new with nf-core: community-built bioinformatics pipelines 🍐 BOSCPhil Ewels

22:20 EDT

H3AGWAS: Portable GWAS workflows for African science 🍐 BOSCBrandenburg Jean-Tristan VINYL: Variant prIoritizatioN bY survivaL analysis 🌀 GalaxyMatteo Chiara

22:25 EDT

Evaluating customized database generation methods for metaproteomics analysis within the Galaxy platform. 🌀 GalaxySubina Mehta Q&A 🍐 BOSCChris Fields

22:30 EDT

An automated, accessible proteogenomic pipeline for high confidence detection and rigorous validation of novel peptide sequence variants in Galaxy-P 🌀 GalaxyAndrew T Rajczewski CWL-Airflow: a lightweight pipeline manager supporting Common Workflow Language 🍐 BOSCMichael Kotliar

22:35 EDT

Q & A 🌀 GalaxyAnshu Bhardwaj

22:40 EDT

Galaxy enables FAIR mass spectrometry imaging data analysis of urothelial carcinoma tissues 🌀 GalaxyMelanie Föll

22:45 EDT

Challenges in implementing Janis: A generator for CWL and WDL pipelines 🍐 BOSCMichael Franklin Democratizing DIA analysis on public cloud infrastructures via Galaxy 🌀 GalaxyMatthias Fahrner

22:50 EDT

EOSC-Nordic Climate Science Workbench roadmap 🌀 GalaxyAnne Fouilloux Rapidly creating portable pipelines with aCLImatise 🍐 BOSCMichael Milton

22:55 EDT

Functionally Assembled Terrestrial Ecosystem Simulator (FATES) with Community Land Model in Galaxy 🌀 GalaxyAnne Fouilloux • Hui Tang • Sonya Geange The all-new Genomics Virtual Lab 🍐 BOSCEnis Afgan

23:10 EDT

Q & A 🌀 GalaxyAnshu Bhardwaj Q&A 🍐 BOSCChris Fields

23:30 EDT

P3-02: : ECRcentral: A central platform for early-career researchers 🍐 JointAziz Khan P3-11: : FASE: Finding Alternative Splicing Events and analysis of RNA-Sequencing Data. 🍐 JointHarsh Sharma P4-10: : Identification of differentially expressed genes between cultivar and weedy type in soybean plant 🌀 JointPrakash Basnet P7-04: : What’s new with nf-core: community-built bioinformatics pipelines 🍐 JointPhil Ewels P7-05: RNA-seq analyses of the hydrated and dehydrated leaves of the resurrection plant, Selaginella tamariscina 🌀 JointEunchae Kwon P7-08: Molecular Property Diagnostic Suite (MPDS): Development of Disease-Specific Web Portals Based on Galaxy Platform 🌀 JointAnamika Singh Gaur Poster / Demo East Session 3 Joint
 
Wednesday, July 22
 

00:30 EDT

Joint East Session 6: COVID-19 JointDieter Bulach

00:31 EDT

Serratus: Ultra-deep search for novel coronaviruses 🍐 JointArtem Babaian

00:45 EDT

MALVIRUS: viral variant calling made easy 🍐 JointYuri Pirola

00:50 EDT

Development of TranSMART and Applications in Biomedical Research 🍐 JointPeter Rice

00:55 EDT

ViPRA-Haplo: de novo reconstruction of viral populations using paired end sequencing data 🍐 JointWeiling Li

01:00 EDT

Q&A Joint

01:05 EDT

COVID-19 PubSeq: Public SARS-CoV-2 Sequence Resource 🍐 JointAndrea Guarracino

01:10 EDT

Designing and executing workflows for virtual screening of the SARS-CoV-2 main protease 🍐 JointSimon Bray

01:25 EDT

Analyzing the Nanopore data of SARS-CoV-2 within the Galaxy framework 🌀 JointNathan Roach

01:40 EDT

Q&A Joint

02:00 EDT

East Keynote 3: Biased by Default: Exploring Discrimination in Research Code JointAbigail Cabunoc Mayes

02:45 EDT

Closing JointGareth Price • Frederik Coppens • Peter Cock • Harpreet Singh • Nomi Harris

03:15 EDT

Birds of a Feather (BOFs) Joint BoF: Computational Chemistry JointChris Barnett BoF: Microbial Bioinformatics with Galaxy JointPeter van Heusden

04:15 EDT

CollaborationFest: Core Joint
 
Friday, July 24
 

01:00 EDT

CollaborationFest: Encore Joint
 
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