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Registration closed July 15.

BCC2020 is online, global, and affordable. The meeting and training are now done, and the CoFest is under way.

The 2020 Bioinformatics Community Conference brings together the Bioinformatics Open Source Conference (BOSC) and the Galaxy Community Conference into a single event featuring training, a meeting, and a CollaborationFest. Events run from July 17 through July 25, and is held in both the eastern and western hemispheres.

avatar for Abeir shalaby

Abeir shalaby

Suez Canal University_EGYPT
Vice Dean of Institute of Biotechnology for postgraduates and research
Cairo, Egypt
professor of Biochemistry , Diplomas of bioinformatics
Vice Dean of Institute of Biotechnology for postgraduates and research . Coordinator and instructor of Bioinformatics diploma
Suez Canal University -EGYPT

Friday, July 17
 

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Saturday, July 18
 

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Sunday, July 19
 

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P1-03: : A somatic variant-calling pipeline for the support of molecular tumor boards at German university hospitals 🍐 JointWolfgang Maier • Patrick Metzger P1-07: : Automating the annotation of biological data through semantic technologies and machine learning 🍐 JointLorcán Pigott-Dix P1-08: : BioThings Explorer: A platform for distributed knowledge integration across biomedical APIs 🍐 JointJiwen Xin P1-10: : BLAST in a container 🍐 JointTom Madden P2-10: : Deploying Galaxy workflows in containers 🌀 JointBert Droesbeke P3-01: : Earth System Modelling and data analysis with Galaxy Climate Science Workbench 🌀 JointAnne Fouilloux P3-04: : Enabling computational workflows with Tripal and Galaxy 🌀 JointSean Buehler P3-09: : Exploring chromatogram library-based data independent acquisition analysis using EncyclopeDIA within Galaxy framework 🌀 JointPratik Jagtap P3-10: : Extensions of READemption for the analysis of several RNA-seq based protocols 🍐 JointTill Sauerwein P3-12: : Full-factorial examination of high-throughput microbiome sequencing workflows from sample preparation to bioinformatic analysis 🍐 JointTravis J. De Wolfe P4-06: : GraphClust2: a galaxy-based solution for clustering RNA sequences to discover conserved and common secondary structures 🌀 JointMilad Miladi P4-07: : GVL Demo: from Administrators to End-users 🌀 JointNuwan Goonasekera P5-04: : Magic-BLAST an accurate RNA-seq mapper 🍐 JointGrzegorz Boratyn P5-07: : Open-Source, Large-Scale Set Similarity Search with Sketch 🍐 JointDaniel Baker P5-10: : Planet Microbe: Toward the reintegration of oceanographic ‘omics dataset in their environmental and physiochemical context 🍐 JointAlise Jany Ponsero P5-12: : Progerin expression induces a significant downregulation of transcription from human repetitive sequences in iPSC-derived dopaminergic neurons 🌀 JointWalter Arancio P6-01: : pyGenomeTracks: Reproducible plots for multivariate genomic data sets 🍐 JointLucille Lopez-Delisle P6-02: : Reproducible, collaborative and exploratory data analysis using CyVerse VICE 🍐 JointReetu Tuteja P6-03: : Running and sharing the ENCODE atac-seq pipeline on Truwl 🍐 JointKarl Sebby P6-08: : Targeted nanopore sequencing by real-time mapping of raw electrical signal with UNCALLED 🍐 JointSam Kovaka P6-12: : Towards more FAIR research software 🍐 JointMateusz Kuzak Poster / Demo West Session 1 Joint

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Monday, July 20
 

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P1-05: : Automated generation of training materials from markdown documents 🌀 JointDelphine Lariviere P1-06: : Automated real-time data analysis and visualizations for the SARS-CoV-2/Covid19 portal 🌀 JointMarius van den Beek P1-09: : BioViz Connect: Web application linking CyVerse cloud resources to genomic visualization in the Integrated Genome Browser 🍐 JointNowlan Freese P2-01: : Community genome annotation integrates with Galaxy via Apollo providing greater integration and more functional annotation options 🌀 JointNathan Dunn P2-05: : CrowdGO: a wisdom of the crowd-based Gene Ontology prediction tool 🍐 JointMaarten Reijnders P3-03: : EDAM: the ontology of bioinformatics operations, topics, data, and formats (update 2020) 🍐 JointMatúš Kalaš P3-06: : eSPiGA: a population genomic analyses package with graphical interface 🍐 JointSebastian E. Ramos-Onsins P4-09: : HiSCiAp and Human Cell Atlas Galaxy instance: User-friendly, scalable tools and workflows for single-cell analysis 🌀 JointPablo Moreno P5-01: : Integrating refgenie and Galaxy for reference data management: a proposal for IDC 🌀 JointIgnacio Eguinoa P5-03: : Jasmine: Fast and accurate structural variant comparison across many individuals 🍐 JointMelanie Kirsche P5-09: : Pan-cancer Aberrant Pathway Activity Analysis (PAPAA): A Galaxy Operable Machine Learning-Based Pipeline. 🌀 JointVijay Krishna Nagampalli P6-06: : sRNAflow: a tool for analysis of small RNA-seq data 🍐 JointPawel Zayakin P6-10: : The cloud-native Galaxy: Galaxy on Kubernetes 🌀 JointNuwan Goonasekera • Enis Afgan • Alexandru Mahmoud P7-01: : ViPRA-Haplo: de novo reconstruction of viral populations using paired end sequencing data) 🍐 JointWeiling Li P7-03: : Visualization of gene regulation in endothelial cells that are programmed to human pluripotent stem cells and differentiated to endothelial or neuronal cells 🍐 JointLuke Trinity P7-07: Modern Data Visualization in Galaxy with Higlass 🌀 JointAlex Ostrovsky Poster / Demo West Session 2 Joint

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Tuesday, July 21
 

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P1-02: : A data model approach to data coordination in the Human Tumor Atlas Network project 🍐 JointXengie Doan P1-04: : An automated, accessible proteogenomic pipeline for high confidence detection and rigorous validation of novel peptide sequence variants in Galaxy-P 🌀 JointAndrew T Rajcewski P2-03: : COVID-19 PubSeq: Public SARS-CoV-2 Sequence Resource 🍐 JointAndrea Guarracino P2-06: : CWL-Airflow: a lightweight pipeline manager supporting Common Workflow Language 🍐 JointMichael Kotliar P2-09: : Democratizing DIA analysis on public cloud infrastructures via Galaxy 🌀 JointMatthias Fahrner P2-11: : Development of TranSMART and Applications in Biomedical Research 🍐 JointPeter Rice P2-12: : Dnpatterntools suite for nucleosome positioning sequence patterns 🌀 JointErinija Pranckeviciene P3-05: : EOSC-Nordic Climate Science Workbench roadmap 🌀 JointAnne Fouilloux P3-07: : Evaluating customized database generation methods for metaproteomics analysis within the Galaxy platform 🌀 JointSubina Mehta P3-08: : Evolution of the Nextflow workflow management system 🍐 JointEvan Floden P4-02: : Galaxy enables FAIR mass spectrometry imaging data analysis of urothelial carcinoma tissues 🌀 JointMelanie Föll P4-08: : H3AGWAS: Portable GWAS workflows for African science 🍐 JointBrandenburg Jean-Tristan P4-12: : In silico characterization of FK506-binding proteins in wheat 🌀 JointAnantika Suri P5-02: : Introducing App Store for IGB, a site for sharing and installing extensions for Integrated Genome Browser from BioViz.org 🍐 JointAnn Loraine P5-05: : Nebulizer: a command-line utility for remote Galaxy admin tasks 🌀 JointPeter Briggs P5-06: : New features for GRNsight: a web application for visualizing models of small- to medium-scale gene regulatory networks 🍐 JointKam D. Dahlquist P5-11: : Producing biodiversity indicators from citizen science projects: update of birds and bats monitoring schemes on Galaxy-E 🌀 JointColine Royaux P6-05: : SIMD Everywhere: portable implementations of SIMD intrinsics 🍐 JointEvan Nemerson P6-07: : Survey of metaproteomics software tools for functional microbiome analysis 🌀 JointRay Sajulga P6-09: : Testing and investigating deep learning models for promoter recognition 🍐 JointRaul Ivan Perez Martell P6-11: : The Xena Geneset Viewer provides a visual comparison of pathways over public genomic cancer data 🍐 JointNathan Dunn P7-02: : ViralMSA: massively scalable reference-guided multiple sequence alignment of viral genomes 🍐 JointNiema Moshiri P7-04: : What’s new with nf-core: community-built bioinformatics pipelines 🍐 JointPhil Ewels Poster / Demo West Session 3 Joint

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Wednesday, July 22
 

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