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➞ Registration closed July 15.

BCC2020 is online, global, and affordable. The meeting and training are now done, and the CoFest is under way.

The 2020 Bioinformatics Community Conference brings together the Bioinformatics Open Source Conference (BOSC) and the Galaxy Community Conference into a single event featuring training, a meeting, and a CollaborationFest. Events run from July 17 through July 25, and is held in both the eastern and western hemispheres.

avatar for Allissa Dillman

Allissa Dillman

NIH
United States
Friday, July 17
 

09:01 EDT

Getting started in Git using GitHub Desktop Training AYo Yehudi

11:30 EDT

Break Joint

12:16 EDT

From stars to constellations: Scaling analyses in Galaxy Training DMarius van den Beek • Saskia Hiltemann • Helena Rasche

14:45 EDT

Break Joint

15:31 EDT

Dockstore Fundamentals: Introduction to Docker and Descriptors for Reproducible Analysis Training DLouise Cabansay • Andrew Duncan • Denis Yuen • Gary Lau • Charles Overbeck • Natalie Perez
 
Saturday, July 18
 

09:01 EDT

Train the Galaxy Trainer Training ESaskia Hiltemann • Delphine Lariviere • Helena Rasche

11:30 EDT

Break Joint

12:16 EDT

Building communities with open source + open science Training BMalvika Sharan • Yo Yehudi

14:45 EDT

Break Joint

15:31 EDT

Bioinformatics in Education Training EUwe Hilgert • Isabella Viney
 
Sunday, July 19
 

10:00 EDT

BCC2020 Conference Day 1: West Joint

10:01 EDT

Welcome JointDave Clements • Nomi Harris

10:30 EDT

West Keynote 1: How Open Source has Changed the World JointLincoln Stein

11:15 EDT

Break! Joint

11:30 EDT

BOSC West Session 1a: Sequencing & analysis 🍐 BOSCChris Fields

11:31 EDT

Digital Expression Explorer 2: a repository of 8 trillion uniformly processed RNA-seq reads and still counting 🍐 BOSCMark Ziemann

11:45 EDT

Targeted nanopore sequencing by real-time mapping of raw electrical signal with UNCALLED 🍐 BOSCSam Kovaka

11:50 EDT

THAPBI PICT -- a metabarcoding analysis pipeline developed as a Phytophthora ITS1 Classification Tool 🍐 BOSCPeter Cock

11:55 EDT

Please contribute to FASTQE so I don’t have to 🍐 BOSCAndrew Lonsdale

12:00 EDT

A reproducible workflow for amplicon-based microbial community analysis using the drake R package 🍐 BOSCRodrigo Ortega-Polo

12:05 EDT

SigBio-Shiny: A standalone interactive application for detecting biological significance on a set of genes 🍐 BOSCSangram Keshari Sahu

12:10 EDT

Streamlining accessibility and computability of large-scale genomic datasets with the NHGRI genome data science Analysis, Visualization, and Informatics Lab-Space (ANVIL) 🍐 BOSCMichael Schatz

12:15 EDT

A comprehensive benchmarking of WGS-based structural variant callers 🍐 BOSCVaruni Sarwal

12:20 EDT

Q&A for session B1a 🍐 BOSCChris Fields

12:24 EDT

BOSC West Session 1b: Open data 🍐 BOSCChris Fields

12:35 EDT

Don’t worry about data management - use Cenzontle 🍐 BOSCAsis Hallab

12:40 EDT

Q&A for session B1b 🍐 BOSCChris Fields

12:45 EDT

Break! Joint

13:00 EDT

P1-03: : A somatic variant-calling pipeline for the support of molecular tumor boards at German university hospitals 🍐 JointWolfgang Maier • Patrick Metzger P1-07: : Automating the annotation of biological data through semantic technologies and machine learning 🍐 JointLorcán Pigott-Dix P1-08: : BioThings Explorer: A platform for distributed knowledge integration across biomedical APIs 🍐 JointJiwen Xin P1-10: : BLAST in a container 🍐 JointTom Madden P2-10: : Deploying Galaxy workflows in containers 🌀 JointBert Droesbeke P3-01: : Earth System Modelling and data analysis with Galaxy Climate Science Workbench 🌀 JointAnne Fouilloux P3-10: : Extensions of READemption for the analysis of several RNA-seq based protocols 🍐 JointTill Sauerwein P4-06: : GraphClust2: a galaxy-based solution for clustering RNA sequences to discover conserved and common secondary structures 🌀 JointMilad Miladi P4-07: : GVL Demo: from Administrators to End-users 🌀 JointNuwan Goonasekera P5-04: : Magic-BLAST an accurate RNA-seq mapper 🍐 JointGrzegorz Boratyn P5-10: : Planet Microbe: Toward the reintegration of oceanographic ‘omics dataset in their environmental and physiochemical context 🍐 JointAlise Jany Ponsero P6-01: : pyGenomeTracks: Reproducible plots for multivariate genomic data sets 🍐 JointLucille Delisle P6-02: : Reproducible, collaborative and exploratory data analysis using CyVerse VICE 🍐 JointReetu Tuteja P6-08: : Targeted nanopore sequencing by real-time mapping of raw electrical signal with UNCALLED 🍐 JointSam Kovaka Poster / Demo West Session 1 Joint

13:45 EDT

Break! Joint

14:00 EDT

BOSC West Session 2: Reproducibility and standards 🍐 BOSCMoni Muñoz-Torres • Jessica Maia

14:01 EDT

Automated generation of training materials from markdown documents 🌀 GalaxyDelphine Lariviere Bionitio: building better bioinformatics tools with batteries included 🍐 BOSCBernie Pope

14:15 EDT

Enhancing rigor and reproducibility in biomedical research 🍐 BOSCJaqueline J. Brito

14:20 EDT

Secondary analysis of publicly available omics data across almost 3 million publications 🍐 BOSCNicholas Darci-Maher

14:25 EDT

Q & A 🌀 GalaxyJennifer Harrow Q&A 🍐 BOSC

14:55 EDT

Q&A 🍐 BOSC

15:00 EDT

Break! Joint

15:15 EDT

BoF: Board games Social JointDelphine Lariviere

17:00 EDT

Galaxy Social One! JointDave Clements
 
Monday, July 20
 

09:00 EDT

BoF: Galaxy Africa - Outreach Plans JointPeter van Heusden

10:00 EDT

BCC2020 Conference Day 2: West Joint

10:01 EDT

Day 2 Welcome JointDave Clements • Morgan Taschuk

10:15 EDT

West Keynote 2: Open minds bring open collaborations JointPrashanth Suravajhala

11:00 EDT

Break! Joint

11:15 EDT

BOSC West Session 3: Building Open Source Communities (BOSC) 🍐 BOSCYo Yehudi

11:16 EDT

Building open source communities and empowering new contributors 🍐 BOSCYo Yehudi

11:30 EDT

Codeathons as a tool for improving diversity in computer science 🍐 BOSCAllissa Dillman

11:35 EDT

CyVerse Learning Institute’s foundational open science skills workshop 🍐 BOSCTyson Swetnam

11:40 EDT

Open Life Science: Empowering early career researchers to become open science leaders 🍐 BOSCBérénice Batut • Yo Yehudi • Malvika Sharan

11:55 EDT

Q&A 🍐 BOSCYo Yehudi

12:00 EDT

Break! Joint

12:20 EDT

AWS Gold Sponsor Talk: Scalable genomics data analysis in the cloud JointLee Pang

13:00 EDT

P1-05: : Automated generation of training materials from markdown documents 🌀 JointDelphine Lariviere P1-09: : BioViz Connect: Web application linking CyVerse cloud resources to genomic visualization in the Integrated Genome Browser 🍐 JointNowlan Freese P1-12: : Codeathons as a tool for improving diversity in computer science 🍐 JointAllissa Dillman P2-05: : CrowdGO: a wisdom of the crowd-based Gene Ontology prediction tool 🍐 JointMaarten Reijnders P3-06: : eSPiGA: a population genomic analyses package with graphical interface 🍐 JointSebastian E. Ramos-Onsins P4-01: : Functionally Assembled Terrestrial Ecosystem Simulator (FATES) with Community Land Model in Galaxy 🌀 JointAnne Fouilloux • Hui Tang • Sonya Geange P4-09: : HiSCiAp and Human Cell Atlas Galaxy instance: User-friendly, scalable tools and workflows for single-cell analysis 🌀 JointPablo Moreno P5-08: : OpenBio.eu: An extrovert bioinformatics research object repository and workflow management system 🍐 JointAlexandros Kanterakis P6-10: : The cloud-native Galaxy: Galaxy on Kubernetes 🌀 JointNuwan Goonasekera • Enis Afgan • Alexandru Mahmoud P7-07: Modern Data Visualization in Galaxy with Higlass 🌀 JointAlex Ostrovsky Poster / Demo West Session 2 Joint

13:45 EDT

Break! Joint

14:00 EDT

Galaxy West Session 4: The big picture 🌀 GalaxyPeter van Heusden

14:01 EDT

Applying Pulsar: a democratised national and international remote compute network for Galaxy 🌀 GalaxyGianmauro Cuccuru

14:15 EDT

Galaxy Community Update 🌀 GalaxySimon Gladman • Gareth Price • Bjorn Gruning • Michael Schatz • Anton Nekrutenko • Jeremy Goecks • Enis Afgan • Dan Blankenberg

14:29 EDT

BOSC West Session 4b: Visualization 🍐 BOSCKarsten Hokamp

14:30 EDT

Introducing App Store for IGB, a site for sharing and installing extensions for Integrated Genome Browser from BioViz.org 🍐 BOSCAnn Loraine

14:35 EDT

pyGenomeTracks: Reproducible plots for multivariate genomic data sets 🍐 BOSCLucille Delisle

14:40 EDT

MultiQC updates: Visualising results from common bioinformatics tools 🍐 BOSCPhil Ewels

14:45 EDT

The Xena Geneset Viewer provides a visual comparison of pathways over public genomic cancer data 🍐 BOSCNathan Dunn

14:50 EDT

New features for GRNsight: a web application for visualizing models of small- to medium-scale gene regulatory networks 🍐 BOSCKam D. Dahlquist Q & A 🌀 GalaxyPeter van Heusden

14:55 EDT

Q&A for session B4b 🍐 BOSCKarsten Hokamp

15:00 EDT

Break! Joint

15:15 EDT

BoF: Computational Biology in the Cloud JointLydia Fleischmann • Yuriy Skripchenko
 
Tuesday, July 21
 

09:00 EDT

BoF: Galaxy and Kubernetes JointNuwan Goonasekera • Enis Afgan • Alexandru Mahmoud

10:00 EDT

BCC2020 Conference Day 3: West Joint Galaxy West Session 5: Galaxy beyond genomics 🌀 GalaxyYvan Le Bras

10:02 EDT

Producing biodiversity indicators from citizen science projects: update of birds and bats monitoring schemes on Galaxy-E 🌀 GalaxyColine Royaux

10:15 EDT

Essential biodiversity variables on Galaxy: implementing the PAMPA application 🌀 GalaxyColine Royaux

10:20 EDT

VINYL: Variant prIoritizatioN bY survivaL analysis 🌀 GalaxyMatteo Chiara

10:25 EDT

Evaluating customized database generation methods for metaproteomics analysis within the Galaxy platform. 🌀 GalaxySubina Mehta

10:30 EDT

An automated, accessible proteogenomic pipeline for high confidence detection and rigorous validation of novel peptide sequence variants in Galaxy-P 🌀 GalaxyAndrew T Rajczewski

10:35 EDT

Q & A 🌀 GalaxyYvan Le Bras

10:45 EDT

Democratizing DIA analysis on public cloud infrastructures via Galaxy 🌀 GalaxyMatthias Fahrner

10:50 EDT

EOSC-Nordic Climate Science Workbench roadmap 🌀 GalaxyAnne Fouilloux

10:55 EDT

The all-new Genomics Virtual Lab 🍐 BOSCEnis Afgan

11:10 EDT

Q & A 🌀 GalaxyYvan Le Bras Q&A 🍐 BOSCPeter Cock

11:15 EDT

Break! Joint

11:30 EDT

P1-02: : A data model approach to data coordination in the Human Tumor Atlas Network project 🍐 JointXengie Doan P2-09: : Democratizing DIA analysis on public cloud infrastructures via Galaxy 🌀 JointMatthias Fahrner P3-05: : EOSC-Nordic Climate Science Workbench roadmap 🌀 JointAnne Fouilloux P4-08: : H3AGWAS: Portable GWAS workflows for African science 🍐 JointBrandenburg Jean-Tristan P5-02: : Introducing App Store for IGB, a site for sharing and installing extensions for Integrated Genome Browser from BioViz.org 🍐 JointAnn Loraine P5-11: : Producing biodiversity indicators from citizen science projects: update of birds and bats monitoring schemes on Galaxy-E 🌀 JointColine Royaux P6-09: : Testing and investigating deep learning models for promoter recognition 🍐 JointRaul Ivan Perez Martell Poster / Demo West Session 3 Joint

12:15 EDT

Break! Joint

13:45 EDT

Break! Joint

14:00 EDT

West Keynote 3: Biased by Default: Exploring Discrimination in Research Code JointAbigail Cabunoc Mayes

14:45 EDT

Closing remarks JointDave Clements • Nomi Harris • Peter Cock • Michael Heuer • Frederik Coppens

15:15 EDT

BoF: Dynamic Visualization of Bioinformatic Data JointNathan Dunn • Rob Buels • Colin Diesh
 
Wednesday, July 22
 

04:15 EDT

CollaborationFest: Core Joint
 
Friday, July 24
 

01:00 EDT

CollaborationFest: Encore Joint
 
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