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➞ Registration closed July 15.

BCC2020 is online, global, and affordable. The meeting and training are now done, and the CoFest is under way.

The 2020 Bioinformatics Community Conference brings together the Bioinformatics Open Source Conference (BOSC) and the Galaxy Community Conference into a single event featuring training, a meeting, and a CollaborationFest. Events run from July 17 through July 25, and is held in both the eastern and western hemispheres.

avatar for Anamika Singh Gaur

Anamika Singh Gaur

CSIR-Indian Institute of Chemical Technology
Doctoral Researcher (Computational Biology)
Hyderabad India
I am currently completing a doctoral degree in biological sciences. I am trained in bioinformatics, chemoinformatics, and molecular modeling approaches.
Friday, July 17
 

21:00 EDT

East Training 1 Joint

21:01 EDT

Command Line Essentials for Bioinformaticians Training EIra Cooke • Wytamma Wirth • Jia Zhang • Legana Fingerhut Dockstore Fundamentals: Introduction to Docker and Descriptors for Reproducible Analysis Training CLouise Cabansay • Andrew Duncan • Denis Yuen How to use Reactome data, tools and web services Training AJoel Weiser • Robin Haw • Solomon Shorser • Justin Cook Introduction to Galaxy Administration I Training DSimon Gladman • Kiran K Telukunta • Nicholas Rhodes • Catherine Bromhead Introduction to Using Galaxy Training BJennifer Hillman-Jackson • Igor Makunin
 
Saturday, July 18
 

00:15 EDT

East Training 2 Joint

00:16 EDT

Bionitio: building better bioinformatics tools with batteries included. I Training BAnna Syme • Bernie Pope From stars to constellations: Scaling analyses in Galaxy Training CMaria Doyle • Marius van den Beek Getting started in Git using GitHub Desktop Training AThom Cuddihy Introduction to Galaxy Administration II Training DSimon Gladman • Kiran K Telukunta • Nicholas Rhodes • Catherine Bromhead Produce a portable germline variant-calling pipeline in CWL and WDL using Janis and GATK I Training EMichael Franklin • Richard Lupat

03:30 EDT

East Training 3 Joint

03:31 EDT

Bionitio: building better bioinformatics tools with batteries included II Training BAnna Syme • Bernie Pope Building communities with open source + open science Training AYo Yehudi High-throughput molecular dynamics with Galaxy Training EChris Barnett • Simon Bray • Tharindu Senapathi Import, handle, visualize and analyze biodiversity data in Galaxy Training CYvan Le Bras Introduction to Galaxy Administration III Training DSimon Gladman • Kiran K Telukunta • Nicholas Rhodes • Catherine Bromhead

21:00 EDT

East Training 4 Joint

21:01 EDT

Galaxies for Crop Science Training EVenice Juanillas • Dmytro Chebotarov • Ken McNally • Ramil Mauleon Galaxy Code Architecture Training AJohn Chilton • Nate Coraor How to write a JBrowse 2 plugin Training DRob Buels • Peter Xie • Scott Cain R / Bioconductor in the Cloud Training BMartin Morgan • Nitesh Turaga • Lori Shepherd Train the Galaxy Trainer Training CGareth Price • Maria Doyle • Simon Gladman
 
Sunday, July 19
 

00:15 EDT

East Training 5 Joint

00:16 EDT

Automating Practical Classroom with GitHub Classroom Training CMuhammad Farhan Sjaugi • Abd Rahim Embedding JBrowse 2 in your website Training ARob Buels • Peter Xie • Scott Cain Introduction to RNA-Seq Analysis with Galaxy Training DGareth Price Produce a portable germline variant-calling pipeline in CWL and WDL using Janis and GATK II Training EMichael Franklin • Richard Lupat Reference data with CVMFS and remote jobs with Pulsar Training BSimon Gladman • Catherine Bromhead

03:30 EDT

East Training 6 Joint

03:31 EDT

Getting your hands on Climate data Training BAnne Fouilloux Handling integrated biological data using Python, Jupyter, and InterMine Training DDaniela Butano • Yo Yehudi • Rachel Lyne Introduction to Machine Learning Training EAlireza Khanteymoori • Anup Kumar Processing of Single Cell RNA-Seq Data with Galaxy Training ABjorn Gruning • Mehmet Tekman • Hans-Rudolf Hotz Scripting Galaxy with BioBlend Training CMarius van den Beek • Nuwan Goonasekera • Nicola Soranzo • Clare Sloggett

17:00 EDT

Galaxy Social One! JointDave Clements

22:00 EDT

BCC2020 Conference Day 1: East Joint

22:01 EDT

Welcome JointNomi Harris • Gareth Price

22:30 EDT

East Keynote 1: Open minds bring open collaborations JointPrashanth Suravajhala

23:15 EDT

Break! Joint

23:30 EDT

BOSC East Session 1a: Sequencing & analysis 🍐 BOSCMoni Muñoz-Torres Galaxy East Session 1: Applications and use cases 🌀 GalaxyMaria Doyle

23:31 EDT

Cooperative bacteriophage genome annotation in the biologist-friendly Galaxy and Apollo platforms 🌀 GalaxyJolene Ramsey Digital Expression Explorer 2: a repository of 8 trillion uniformly processed RNA-seq reads and still counting 🍐 BOSCMark Ziemann

23:45 EDT

Community genome annotation integrates with Galaxy via Apollo providing greater integration and more functional annotation options 🌀 GalaxyNathan Dunn Targeted nanopore sequencing by real-time mapping of raw electrical signal with UNCALLED 🍐 BOSCSam Kovaka

23:50 EDT

Computational chemistry analysis using Galaxy: Exploring antigen-antibody binding patterns for MUC1-AR20.5 🌀 GalaxyChris Barnett THAPBI PICT -- a metabarcoding analysis pipeline developed as a Phytophthora ITS1 Classification Tool 🍐 BOSCPeter Cock

23:55 EDT

Please contribute to FASTQE so I don’t have to 🍐 BOSCAndrew Lonsdale
 
Monday, July 20
 

00:00 EDT

A reproducible workflow for amplicon-based microbial community analysis using the drake R package 🍐 BOSCRodrigo Ortega-Polo

00:05 EDT

Q & A 🌀 GalaxyMaria Doyle SigBio-Shiny: A standalone interactive application for detecting biological significance on a set of genes 🍐 BOSCSangram Keshari Sahu

00:10 EDT

Integrating and analyzing genotype, phenotype, and environmental data through CartograTree and Tripal Galaxy 🌀 GalaxyIrene Cobo Streamlining accessibility and computability of large-scale genomic datasets with the NHGRI genome data science Analysis, Visualization, and Informatics Lab-Space (ANVIL) 🍐 BOSCMichael Schatz

00:15 EDT

A comprehensive benchmarking of WGS-based structural variant callers 🍐 BOSCVaruni Sarwal

00:20 EDT

Q&A for session B1a 🍐 BOSCMoni Muñoz-Torres

00:25 EDT

Automated real-time data analysis and visualizations for the SARS-CoV-2/Covid19 portal 🌀 GalaxyMarius van den Beek BOSC East Session 1b: Open data 🍐 BOSCMoni Muñoz-Torres Tripal: an example of successful open-source distributed team development 🍐 BOSCMargaret Staton

00:30 EDT

BioThings Explorer: A platform for distributed knowledge integration across biomedical APIs 🍐 BOSCJiwen Xin

00:35 EDT

Don’t worry about data management - use Cenzontle 🍐 BOSCAsis Hallab

00:40 EDT

Q & A 🌀 GalaxyMaria Doyle Q&A for session B1b 🍐 BOSCMoni Muñoz-Torres

02:00 EDT

BOSC East Session 2: Reproducibility and standards 🍐 BOSCHeather Wiencko Galaxy Session 2: Extending the Galaxy Ecosystem 🌀 GalaxySimon Gladman

02:01 EDT

Automated generation of training materials from markdown documents 🌀 GalaxyDelphine Lariviere Bionitio: building better bioinformatics tools with batteries included 🍐 BOSCBernie Pope

02:15 EDT

Enhancing rigor and reproducibility in biomedical research 🍐 BOSCJaqueline J. Brito Integrating refgenie and Galaxy for reference data management: a proposal for IDC 🌀 GalaxyIgnacio Eguinoa

02:20 EDT

Galaxy and its Tool Shed on Python 3: conclusion of a long journey 🌀 GalaxyNicola Soranzo Secondary analysis of publicly available omics data across almost 3 million publications 🍐 BOSCNicholas Darci-Maher

02:25 EDT

Q & A 🌀 GalaxySimon Gladman

02:30 EDT

Implementation of the IEEE-2791-2020 standard (BioCompute Objects) in Galaxy via workflow invocations 🌀 GalaxyCharles Hadley King

02:35 EDT

Goslin - A grammar of succinct lipid nomenclature 🍐 BOSCNils Hoffmann Porting the rCASC workflow for scRNA-Seq data analysis to Galaxy and the Laniakea Galaxy on-demand system 🌀 Galaxypietro mandreoli

02:40 EDT

Executable Research Article (ERA): Enrich a research paper with code and data 🍐 BOSCEmmy Tsang Galaxy, Selenium, and End-to-end Testing 🌀 GalaxyOleg Zharkov

02:55 EDT

Q & A 🌀 GalaxySimon Gladman Q&A 🍐 BOSCHeather Wiencko

03:15 EDT

Birds of a Feather (BOFs) Joint

05:00 EDT

Galaxy Social East! JointGareth Price

21:00 EDT

Birds of a Feather (BOFs) Joint BoF: Celestial Masses: Galaxy for mass spectrometry-based research JointPratik Jagtap BoF: Computational Immunoinformatics Worflows Over Galaxy Server JointAmbarish Kumar

22:00 EDT

BCC2020 Conference Day 2: East Joint

22:01 EDT

Day 2 East Welcome JointGareth Price

22:15 EDT

East Keynote 2: How Open Source has Changed the World JointLincoln Stein

23:15 EDT

BOSC East Session 3: Building Open Source Communities (BOSC) 🍐 BOSCNomi Harris Galaxy East Session 3: Galaxy Administration 🌀 GalaxyNuwan Goonasekera

23:16 EDT

Building open source communities and empowering new contributors 🍐 BOSCYo Yehudi The cloud-native Galaxy: Galaxy on Kubernetes 🌀 GalaxyAlexandru Mahmoud

23:30 EDT

Codeathons as a tool for improving diversity in computer science 🍐 BOSCAllissa Dillman Custos: Enabling User Authentication via External Institutional Identities 🌀 GalaxyJuleen Graham

23:35 EDT

CyVerse Learning Institute’s foundational open science skills workshop 🍐 BOSCTyson Swetnam On-demand Galaxy with Laniakea: results and future perspectives 🌀 GalaxyMarco Antonio Tangaro

23:40 EDT

HiSCiAp and Human Cell Atlas Galaxy instance: User-friendly, scalable tools and workflows for single-cell analysis 🌀 GalaxyPablo Moreno Open Life Science: Empowering early career researchers to become open science leaders 🍐 BOSCBérénice Batut • Yo Yehudi • Malvika Sharan

23:55 EDT

Q & A 🌀 GalaxyNuwan Goonasekera Q&A 🍐 BOSCNomi Harris
 
Tuesday, July 21
 

00:15 EDT

Sponsor Session East JointGareth Price

00:20 EDT

AWS Gold Sponsor Talk: Scalable genomics data analysis in the cloud JointLee Pang

00:40 EDT

Software Sustainability Institute Gold Sponsor Talk: Most code is cr#p and that’s okay JointNeil Chue Hong

02:00 EDT

BOSC East Session 4a: Developer tools & libraries 🍐 BOSCHeather Wiencko Galaxy East Session 4: The big picture 🌀 GalaxyHarpreet Singh

02:01 EDT

Applying Pulsar: a democratised national and international remote compute network for Galaxy 🌀 GalaxyGianmauro Cuccuru Shesmu: A bioinformatics orchestration tool 🍐 BOSCAndre Masella

02:15 EDT

Galaxy Community Update 🌀 GalaxySimon Gladman • Gareth Price • Michael Schatz • Bjorn Gruning • Anton Nekrutenko • Jeremy Goecks • The Other Enis Afgan • Daniel Blankenberg SIMD Everywhere: portable implementations of SIMD intrinsics 🍐 BOSCEvan Nemerson

02:20 EDT

Biopython Project Update 2020 🍐 BOSCPeter Cock

02:25 EDT

Q&A for session B4a 🍐 BOSCHeather Wiencko

02:30 EDT

BOSC East Session 4b: Visualization 🍐 BOSCHeather Wiencko Introducing App Store for IGB, a site for sharing and installing extensions for Integrated Genome Browser from BioViz.org 🍐 BOSCAnn Loraine

02:35 EDT

pyGenomeTracks: Reproducible plots for multivariate genomic data sets 🍐 BOSCLucille Delisle

02:40 EDT

MultiQC updates: Visualising results from common bioinformatics tools 🍐 BOSCPhil Ewels

02:45 EDT

The Xena Geneset Viewer provides a visual comparison of pathways over public genomic cancer data 🍐 BOSCNathan Dunn

02:50 EDT

New features for GRNsight: a web application for visualizing models of small- to medium-scale gene regulatory networks 🍐 BOSCKam D. Dahlquist Q & A 🌀 GalaxyHarpreet Singh

02:55 EDT

Q&A for session B4b 🍐 BOSCHeather Wiencko

03:15 EDT

Birds of a Feather (BOFs) Joint BoF: Galaxy-India: Launch and Outreach Plans JointHarpreet Singh • Anshu Bhardwaj

21:00 EDT

Birds of a Feather (BOFs) Joint BoF: IWC - Intergalactic Workflow Commission JointBrad Langhorst

22:00 EDT

BCC2020 Conference Day 3: East Joint BOSC East Session 5: Workflow management systems 🍐 BOSCChris Fields Galaxy East Session 5: Galaxy beyond genomics 🌀 GalaxyAnshu Bhardwaj

22:01 EDT

Evolution of the Nextflow workflow management system 🍐 BOSCEvan Floden

22:02 EDT

Producing biodiversity indicators from citizen science projects: update of birds and bats monitoring schemes on Galaxy-E 🌀 GalaxyColine Royaux

22:15 EDT

Essential biodiversity variables on Galaxy: implementing the PAMPA application 🌀 GalaxyColine Royaux What’s new with nf-core: community-built bioinformatics pipelines 🍐 BOSCPhil Ewels

22:20 EDT

H3AGWAS: Portable GWAS workflows for African science 🍐 BOSCBrandenburg Jean-Tristan VINYL: Variant prIoritizatioN bY survivaL analysis 🌀 GalaxyMatteo Chiara

22:25 EDT

Evaluating customized database generation methods for metaproteomics analysis within the Galaxy platform. 🌀 GalaxySubina Mehta Q&A 🍐 BOSCChris Fields

22:30 EDT

An automated, accessible proteogenomic pipeline for high confidence detection and rigorous validation of novel peptide sequence variants in Galaxy-P 🌀 GalaxyAndrew T. Rajczewski CWL-Airflow: a lightweight pipeline manager supporting Common Workflow Language 🍐 BOSCMichael Kotliar

22:40 EDT

Galaxy enables FAIR mass spectrometry imaging data analysis of urothelial carcinoma tissues 🌀 GalaxyMelanie Föll

22:45 EDT

Challenges in implementing Janis: A generator for CWL and WDL pipelines 🍐 BOSCMichael Franklin Democratizing DIA analysis on public cloud infrastructures via Galaxy 🌀 GalaxyMatthias Fahrner

22:50 EDT

EOSC-Nordic Climate Science Workbench roadmap 🌀 GalaxyAnne Fouilloux Rapidly creating portable pipelines with aCLImatise 🍐 BOSCMichael Milton

22:55 EDT

Functionally Assembled Terrestrial Ecosystem Simulator (FATES) with Community Land Model in Galaxy 🌀 GalaxyAnne Fouilloux • Hui Tang • Sonya Geange The all-new Genomics Virtual Lab 🍐 BOSCThe Other Enis Afgan

23:10 EDT

Q&A 🍐 BOSCChris Fields

23:30 EDT

P7-08: Molecular Property Diagnostic Suite (MPDS): Development of Disease-Specific Web Portals Based on Galaxy Platform 🌀 JointAnamika Singh Gaur Poster / Demo East Session 3 Joint
 
Wednesday, July 22
 

00:30 EDT

Joint East Session 6: COVID-19 JointDieter Bulach

00:31 EDT

Serratus: Ultra-deep search for novel coronaviruses 🍐 JointArtem Babaian

00:45 EDT

MALVIRUS: viral variant calling made easy 🍐 JointYuri Pirola

00:50 EDT

Development of TranSMART and Applications in Biomedical Research 🍐 JointPeter Rice

00:55 EDT

ViPRA-Haplo: de novo reconstruction of viral populations using paired end sequencing data 🍐 JointWeiling Li

01:05 EDT

COVID-19 PubSeq: Public SARS-CoV-2 Sequence Resource 🍐 JointAndrea Guarracino

01:10 EDT

Designing and executing workflows for virtual screening of the SARS-CoV-2 main protease 🍐 JointSimon Bray

01:25 EDT

Analyzing the Nanopore data of SARS-CoV-2 within the Galaxy framework 🌀 JointNathan Roach

01:40 EDT

Q&A Joint

02:00 EDT

East Keynote 3: Biased by Default: Exploring Discrimination in Research Code JointAbigail Cabunoc Mayes

02:45 EDT

Closing JointGareth Price • Frederik Coppens • Peter Cock • Harpreet Singh • Nomi Harris

03:15 EDT

Birds of a Feather (BOFs) Joint BoF: Computational Chemistry JointChris Barnett
 
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