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Registration closed July 15.

BCC2020 is online, global, and affordable. The meeting and training are now done, and the CoFest is under way.

The 2020 Bioinformatics Community Conference brings together the Bioinformatics Open Source Conference (BOSC) and the Galaxy Community Conference into a single event featuring training, a meeting, and a CollaborationFest. Events run from July 17 through July 25, and is held in both the eastern and western hemispheres.

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Friday, July 17 • 12:16 - 14:45
Introduction to Galaxy Administration II

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This session is full.

This is the second session of a three-part workshop. Please sign up for all 3 sessions

After attending this three-session workshop you will be able to set up, configure, and administer a fairly polished Galaxy instance. Topics include:
  • deployment and platform options
  • using Ansible to install and configure your own server
  • customizing and extending your instance
  • defining and importing genomes, running data managers
  • upgrading to a new Galaxy release
  • configure nginX webserver with Galaxy
  • database overview and best practices
  • running tools in containers
  • users and groups and quotas
  • storage management and using heterogeneous storage services
  • exploring the Galaxy job configuration file
  • connecting Galaxy to compute clusters
  • polishing Galaxy on uWSGI application server
  • instance monitoring using Grafana
  • shared data management with CVMFS
  • when things go wrong: Galaxy server troubleshooting tips & examples

Prerequisites
  • Knowledge and comfort with the Unix/Linux command line interface and a text editor: If you don't know what cd, mv, rm, mkdir, chmod, grep and so on can do then you will struggle

Speakers
avatar for Sergey Golitsynskiy

Sergey Golitsynskiy

software engineer, Johns Hopkins University
avatar for Martin Čech

Martin Čech

Dev and Trainer, free element
Galaxy Enthusiast
avatar for Nate Coraor

Nate Coraor

Galaxy Project, Penn State University
avatar for Nicola Soranzo

Nicola Soranzo

Earlham Institute


Friday July 17, 2020 12:16 - 14:45 EDT
Training C