Name: Introduction to Galaxy Administration I
Start: 2020-07-17T09:01:00-0400
End: 2020-07-17T11:30:00-0400

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➞ Registration closed July 15.

BCC2020 is online, global, and affordable. The meeting and training are now done, and the CoFest is under way.

The 2020 Bioinformatics Community Conference brings together the Bioinformatics Open Source Conference (BOSC) and the Galaxy Community Conference into a single event featuring training, a meeting, and a CollaborationFest. Events run from July 17 through July 25, and is held in both the eastern and western hemispheres.

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Introduction to Galaxy Administration I

→ Schedule, Chat, byobo Cheatsheet, Video

This session is full.

After attending this three-session workshop you will be able to set up, configure, and administer a fairly polished Galaxy instance. Topics include:

deployment and platform options
using Ansible to install and configure your own server
customizing and extending your instance
defining and importing genomes, running data managers
upgrading to a new Galaxy release
configure nginX webserver with Galaxy
database overview and best practices
running tools in containers
users and groups and quotas
storage management and using heterogeneous storage services
exploring the Galaxy job configuration file
connecting Galaxy to compute clusters
polishing Galaxy on uWSGI application server
instance monitoring using Grafana
shared data management with CVMFS
when things go wrong: Galaxy server troubleshooting tips & examples

Prerequisites

Knowledge and comfort with the Unix/Linux command line interface and a text editor: If you don't know what cd, mv, rm, mkdir, chmod, grep and so on can do then you will struggle

Speakers