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Registration closed July 15.

BCC2020 is online, global, and affordable. The meeting and training are now done, and the CoFest is under way.

The 2020 Bioinformatics Community Conference brings together the Bioinformatics Open Source Conference (BOSC) and the Galaxy Community Conference into a single event featuring training, a meeting, and a CollaborationFest. Events run from July 17 through July 25, and is held in both the eastern and western hemispheres.

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Friday, July 17 • 21:01 - 23:30
Dockstore Fundamentals: Introduction to Docker and Descriptors for Reproducible Analysis

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Slides, Video

This session is full.

This will be a hands-on workshop to train a beginner on the fundamental technologies used to create portable and reproducible workflows. Attendees will learn how to use Docker for packaging software into containers, how to write analytical workflows in a descriptor language (CWL, WDL, or Nextflow), and how to publish these workflows on Dockstore for sharing with others. We will cover basic Dockstore features such as running workflows using the Dockstore command-line interface and end with an overview of more advanced topics like best practices for workflows, publishing using DOIs, and sharing collections of workflows through organizations.

Prerequisites
  • Basic command line and scripting knowledge
  • A laptop with a modern web browser.

Speakers
avatar for Louise Cabansay

Louise Cabansay

Software Engineer, Dockstore, UC Santa Cruz Genomics Institute
avatar for Andrew Duncan

Andrew Duncan

Software Developer, OICR
avatar for Denis Yuen

Denis Yuen

Senior Software Developer, Ontario Institute for Cancer Research
Workflows, cloud, GA4GH, Docker, Java



Friday July 17, 2020 21:01 - 23:30 EDT
Training C