Name: Scripting Galaxy with BioBlend
Start: 2020-07-19T03:31:00-0400
End: 2020-07-19T06:00:00-0400

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BCC2020 is online, global, and affordable. The meeting and training are now done, and the CoFest is under way.

The 2020 Bioinformatics Community Conference brings together the Bioinformatics Open Source Conference (BOSC) and the Galaxy Community Conference into a single event featuring training, a meeting, and a CollaborationFest. Events run from July 17 through July 25, and is held in both the eastern and western hemispheres.

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Scripting Galaxy with BioBlend

→ Slides , Tutorial, Video

Galaxy has an always-growing API that allows for external programs to upload and download data, manage histories and datasets, run tools and workflows, and even perform admin tasks. This session will cover various approaches to access the API, in particular using the BioBlend Python library.

Prerequisites

Basic understanding of Galaxy from a developer point of view.
Python programming.
A laptop with a modern web browser (Google Chrome, Firefox and Safari will work best).

Speakers