→ Tutorial, Video
This tutorial will guide you through loading and analyzing integrated biological data (generally genomic or proteomic data) using
InterMine, either via UI or via an API in Python. Topics covered will include automatically generating code to perform queries, customising the code to meet your needs, and automated analysis of sets, e.g gene sets, including enrichment statistics. Skills gained can be re-used in any of the dozens of InterMines available, covering a broad range of organisms and dedicated purposes, from model organisms to plants, drug targets, and mitochondrial DNA.
Users will also learn how to import and export their gene and protein lists to and from
Jupyter notebooks hosted on
https://jupyter.org/.Prerequisites- Little or no experience using Galaxy
- A laptop with a modern web browser.