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Registration closed July 15.

BCC2020 is online, global, and affordable. The meeting and training are now done, and the CoFest is under way.

The 2020 Bioinformatics Community Conference brings together the Bioinformatics Open Source Conference (BOSC) and the Galaxy Community Conference into a single event featuring training, a meeting, and a CollaborationFest. Events run from July 17 through July 25, and is held in both the eastern and western hemispheres.

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Friday, July 17 • 09:01 - 11:30
Adding Fun(ction) to Microbiome Analysis: Metatranscriptomics and Metaproteomics Workflows in Galaxy

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 Schedule, Chat, Slides, GTN, Video

Functional microbiome analysis which estimates the functional groups expressed by microbial community, enables researchers to look beyond taxonomic composition and correlation with the condition under study. The tutorial will introduce attendees to using microbial community RNASeq data analysis using ASaiM metatranscriptomics workflow (https://training.galaxyproject.org/training-material/topics/metagenomics/tutorials/metatranscriptomics-short/tutorial.html).

We will also present metaproteomics workflows (https://training.galaxyproject.org/training-material/topics/proteomics/tutorials/metaproteomics/tutorial.html) for characterizing microbial proteins using mass spectrometry data. Attendees will be able to run workflows on small test datasets. Lastly, workshop trainers will update attendees on the latest developments in Galaxy tools and workflows for functional microbiome and multi-omics analysis.
  • Introduction to functional microbiome analysis
  • Metatranscriptomics using Galaxy framework
  • Metaproteomic analysis using Galaxy

Prerequisites
  • A laptop with a modern web browser.

Speakers
avatar for Tim Griffin

Tim Griffin

Professor, University of Minnesota
avatar for James Johnson

James Johnson

Senior Software Developer, Minnesota Supercomputing Institute, University of Minnesota
Galaxy for genomics and proteomics
avatar for Saskia Hiltemann

Saskia Hiltemann

Erasmus MC
Metagenomics, Training materials, board games, CTF & security
avatar for Pratik Jagtap

Pratik Jagtap

Research Assistant Professor, University of Minnesota
Metaproteomics . Proteomics . Galaxy Workflows . Proteogenomics . Galaxy-P . Galaxy-India .
avatar for Subina Mehta

Subina Mehta

Researcher, University of Minnesota


Friday July 17, 2020 09:01 - 11:30 EDT
Training E