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Registration closed July 15.

BCC2020 is online, global, and affordable. The meeting and training are now done, and the CoFest is under way.

The 2020 Bioinformatics Community Conference brings together the Bioinformatics Open Source Conference (BOSC) and the Galaxy Community Conference into a single event featuring training, a meeting, and a CollaborationFest. Events run from July 17 through July 25, and is held in both the eastern and western hemispheres.

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Tuesday, July 21 • 02:35 - 02:40
pyGenomeTracks: Reproducible plots for multivariate genomic data sets 🍐

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The presenter will be available for live Q&A in sessions of both hemispheres and is presenting a poster in session 1 in both hemispheres.

Lucille Lopez-Delisle 1, Leily Rabbani 2, Joachim Wolff 3, Vivek Bhardwaj 2, Rolf Backofen 3,
Bjoern Gruening 3 Fidel Ramirez 2,*,Thomas Manke 2,

1 EPFL SV ISREC UPDUB, 1015 Lausanne, Switzerland: lucille.delisle@epfl.ch
2 Max Planck Institute of Immunobiology and Epigenetics, Stübeweg 51, 79108 Freiburg im
Breisgau, Germany
3 Bioinformatics Group, Department of Computer Science, University of Freiburg, Georges-Köhler-Allee 106, 79110 Freiburg, Germany

Project Website: https://github.com/deeptools/pyGenomeTracks
Source Code: https://github.com/deeptools/pyGenomeTracks
License: GPLv3

Main Text of Abstract

Generating publication ready plots to display multiple genomic tracks can pose a serious challenge.
Making desirable and accurate figures requires considerable effort. This is usually done by hand or
by using a vector graphic software. pyGenomeTracks (PGT) is a modular plotting tool that easily
combines multiple tracks and plots them in a highly customizable, publication ready layout. It can
generate a variety of data formats which are required by many journals. Importantly, PGT enables a
reproducible and standardized generation of images, which can be integrated in more general

avatar for Lucille Delisle

Lucille Delisle

Hi,I am a Post-doc in Denis Duboule lab working on gene regulation during development.For the scientific part, I analyzed various NGS methods including Hi-C, ATAC-seq, CUT&RUN. I recently developped a new method for single-cell RNA-seq, named baredSC.For the galaxy part, I develop... Read More →

Tuesday July 21, 2020 02:35 - 02:40 EDT