Loading…
BCC2020 has ended
➞ Set your timezone before doing anything else on this site (home page, on the right)
➞ Limit what is shown by Type, Category, or Hemisphere
➞ Registration closed July 15.

BCC2020 is online, global, and affordable. The meeting and training are now done, and the CoFest is under way.

The 2020 Bioinformatics Community Conference brings together the Bioinformatics Open Source Conference (BOSC) and the Galaxy Community Conference into a single event featuring training, a meeting, and a CollaborationFest. Events run from July 17 through July 25, and is held in both the eastern and western hemispheres.

avatar for Jennifer Chang

Jennifer Chang

Iowa State University
ORISE Post-Doc
Iowa, USA
Websitej23414.github.io/
Bioinformatic Post-Doc.  I have been programming (in one language or another) since 2006 and I am interested in writing practical and intuitive tools for data analysis and visualization. My specialization was network analysis and my PhD Project, the Mango Graph Studio software, has been licensed to a startup. For the past three years, I was an ORISE Post-Doc at USDA-ARS, scripting automated reports to monitor Influenza A viruses in swine. This year, I've moved to the Genome Informatics Facility at ISU to write tutorials and reusable pipelines for broader research use.
Saturday, July 18
 

15:31 EDT

Introduction to Nextflow Training CEvan Floden • Paolo Di Tommaso • Kevin Sayers
 
Sunday, July 19
 

10:00 EDT

BCC2020 Conference Day 1: West Joint

10:01 EDT

Welcome JointDave Clements • Nomi Harris

10:30 EDT

West Keynote 1: How Open Source has Changed the World JointLincoln Stein

11:30 EDT

Galaxy West Session 1: Applications and use cases 🌀 GalaxyDelphine Lariviere

11:50 EDT

Computational chemistry analysis using Galaxy: Exploring antigen-antibody binding patterns for MUC1-AR20.5 🌀 GalaxyChris Barnett

13:00 EDT

P2-10: : Deploying Galaxy workflows in containers 🌀 JointBert Droesbeke P3-04: : Enabling computational workflows with Tripal and Galaxy 🌀 JointSean Buehler P4-07: : GVL Demo: from Administrators to End-users 🌀 JointNuwan Goonasekera P6-02: : Reproducible, collaborative and exploratory data analysis using CyVerse VICE 🍐 JointReetu Tuteja

14:01 EDT

Automated generation of training materials from markdown documents 🌀 GalaxyDelphine Lariviere

14:30 EDT

Implementation of the IEEE-2791-2020 standard (BioCompute Objects) in Galaxy via workflow invocations 🌀 GalaxyCharles Hadley King
 
Monday, July 20
 

10:00 EDT

BCC2020 Conference Day 2: West Joint

10:01 EDT

Day 2 Welcome JointDave Clements • Morgan Taschuk

10:15 EDT

West Keynote 2: Open minds bring open collaborations JointPrashanth Suravajhala

11:15 EDT

Galaxy West Session 3: Galaxy Administration 🌀 GalaxyJohn Chilton

11:16 EDT

The cloud-native Galaxy: Galaxy on Kubernetes 🌀 GalaxyAlexandru Mahmoud

11:40 EDT

HiSCiAp and Human Cell Atlas Galaxy instance: User-friendly, scalable tools and workflows for single-cell analysis 🌀 GalaxyPablo Moreno

12:20 EDT

AWS Gold Sponsor Talk: Scalable genomics data analysis in the cloud JointLee Pang

13:00 EDT

P6-10: : The cloud-native Galaxy: Galaxy on Kubernetes 🌀 JointNuwan Goonasekera • The Other Enis Afgan • Alexandru Mahmoud

14:00 EDT

BOSC West Session 4a: Developer tools & libraries 🍐 BOSCKarsten Hokamp Galaxy West Session 4: The big picture 🌀 GalaxyPeter van Heusden

14:15 EDT

SIMD Everywhere: portable implementations of SIMD intrinsics 🍐 BOSCEvan Nemerson

23:15 EDT

Galaxy East Session 3: Galaxy Administration 🌀 GalaxyNuwan Goonasekera
 
Tuesday, July 21
 

10:00 EDT

BCC2020 Conference Day 3: West Joint BOSC West Session 5: Workflow management systems 🍐 BOSCPeter Cock

10:01 EDT

Evolution of the Nextflow workflow management system 🍐 BOSCEvan Floden

10:15 EDT

What’s new with nf-core: community-built bioinformatics pipelines 🍐 BOSCPhil Ewels

10:30 EDT

An automated, accessible proteogenomic pipeline for high confidence detection and rigorous validation of novel peptide sequence variants in Galaxy-P 🌀 GalaxyAndrew T. Rajczewski CWL-Airflow: a lightweight pipeline manager supporting Common Workflow Language 🍐 BOSCMichael Kotliar

11:30 EDT

P3-08: : Evolution of the Nextflow workflow management system 🍐 JointEvan Floden P7-04: : What’s new with nf-core: community-built bioinformatics pipelines 🍐 JointPhil Ewels

12:31 EDT

Serratus: Ultra-deep search for novel coronaviruses 🍐 JointArtem Babaian

12:45 EDT

MALVIRUS: viral variant calling made easy 🍐 JointYuri Pirola

13:05 EDT

COVID-19 PubSeq: Public SARS-CoV-2 Sequence Resource 🍐 JointAndrea Guarracino

13:10 EDT

Designing and executing workflows for virtual screening of the SARS-CoV-2 main protease 🍐 JointSimon Bray

13:25 EDT

Analyzing the Nanopore data of SARS-CoV-2 within the Galaxy framework 🌀 JointNathan Roach

14:00 EDT

West Keynote 3: Biased by Default: Exploring Discrimination in Research Code JointAbigail Cabunoc Mayes

14:45 EDT

Closing remarks JointDave Clements • Nomi Harris • Peter Cock • Michael Heuer • Frederik Coppens

22:01 EDT

Evolution of the Nextflow workflow management system 🍐 BOSCEvan Floden
 
  • Timezone
  • Filter By Date BCC2020 Jul 16 -24, 2020
    • July 2020
      SunMonTueWedThuFriSat
       1234
      567891011
      12131415161718
      19202122232425
      262728293031 
  • Filter By Venue Online
  • Filter By Type
  • CoFest
  • Meeting-East
  • Meeting-West
  • Social / Networking
  • Training-East
  • Training-West
  • Category
  • Hemisphere