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➞ Registration closed July 15.

BCC2020 is online, global, and affordable. The meeting and training are now done, and the CoFest is under way.

The 2020 Bioinformatics Community Conference brings together the Bioinformatics Open Source Conference (BOSC) and the Galaxy Community Conference into a single event featuring training, a meeting, and a CollaborationFest. Events run from July 17 through July 25, and is held in both the eastern and western hemispheres.

avatar for Keri Multerer

Keri Multerer

Victoria University
Graduate Student
Wellington, New Zealand
I have a background in biology and taught myself to code in python 4 years ago. I'm excited to bring the two passions together for a project researching polygenic risk scores and and gene-gene interaction networks with Victoria University.
Friday, July 17
 

09:01 EDT

Introduction to Galaxy Administration I Training CThat Other Person • Martin Čech • Nate Coraor • Nicola Soranzo • Helena Rasche

21:00 EDT

East Training 1 Joint

21:01 EDT

Dockstore Fundamentals: Introduction to Docker and Descriptors for Reproducible Analysis Training CLouise Cabansay • Andrew Duncan • Denis Yuen How to use Reactome data, tools and web services Training AJoel Weiser • Robin Haw • Solomon Shorser • Justin Cook
 
Saturday, July 18
 

00:15 EDT

East Training 2 Joint

00:16 EDT

Bionitio: building better bioinformatics tools with batteries included. I Training BAnna Syme • Bernie Pope Produce a portable germline variant-calling pipeline in CWL and WDL using Janis and GATK I Training EMichael Franklin • Richard Lupat

03:30 EDT

East Training 3 Joint

03:31 EDT

Bionitio: building better bioinformatics tools with batteries included II Training BAnna Syme • Bernie Pope

21:00 EDT

East Training 4 Joint

21:01 EDT

R / Bioconductor in the Cloud Training BMartin Morgan • Nitesh Turaga • Lori Shepherd
 
Sunday, July 19
 

00:15 EDT

East Training 5 Joint

00:16 EDT

Produce a portable germline variant-calling pipeline in CWL and WDL using Janis and GATK II Training EMichael Franklin • Richard Lupat

03:30 EDT

East Training 6 Joint

03:31 EDT

Handling integrated biological data using Python, Jupyter, and InterMine Training DDaniela Butano • Yo Yehudi • Rachel Lyne Scripting Galaxy with BioBlend Training CMarius van den Beek • Nuwan Goonasekera • Nicola Soranzo • Clare Sloggett

22:00 EDT

BCC2020 Conference Day 1: East Joint

22:30 EDT

East Keynote 1: Open minds bring open collaborations JointPrashanth Suravajhala

23:30 EDT

BOSC East Session 1a: Sequencing & analysis 🍐 BOSCMoni Muñoz-Torres

23:31 EDT

Digital Expression Explorer 2: a repository of 8 trillion uniformly processed RNA-seq reads and still counting 🍐 BOSCMark Ziemann

23:45 EDT

Targeted nanopore sequencing by real-time mapping of raw electrical signal with UNCALLED 🍐 BOSCSam Kovaka

23:50 EDT

THAPBI PICT -- a metabarcoding analysis pipeline developed as a Phytophthora ITS1 Classification Tool 🍐 BOSCPeter Cock
 
Monday, July 20
 

00:00 EDT

A reproducible workflow for amplicon-based microbial community analysis using the drake R package 🍐 BOSCRodrigo Ortega-Polo

00:05 EDT

SigBio-Shiny: A standalone interactive application for detecting biological significance on a set of genes 🍐 BOSCSangram Keshari Sahu

00:10 EDT

Streamlining accessibility and computability of large-scale genomic datasets with the NHGRI genome data science Analysis, Visualization, and Informatics Lab-Space (ANVIL) 🍐 BOSCMichael Schatz

00:15 EDT

A comprehensive benchmarking of WGS-based structural variant callers 🍐 BOSCVaruni Sarwal

00:20 EDT

Q&A for session B1a 🍐 BOSCMoni Muñoz-Torres

00:25 EDT

Automated real-time data analysis and visualizations for the SARS-CoV-2/Covid19 portal 🌀 GalaxyMarius van den Beek

00:30 EDT

BioThings Explorer: A platform for distributed knowledge integration across biomedical APIs 🍐 BOSCJiwen Xin

00:35 EDT

Don’t worry about data management - use Cenzontle 🍐 BOSCAsis Hallab

00:40 EDT

Q & A 🌀 GalaxyMaria Doyle

01:00 EDT

P1-01: : A composable rootless container system for genomic analysis pipelines 🍐 JointXu Yang P6-01: : pyGenomeTracks: Reproducible plots for multivariate genomic data sets 🍐 JointLucille Delisle

02:00 EDT

BOSC East Session 2: Reproducibility and standards 🍐 BOSCHeather Wiencko

02:01 EDT

Bionitio: building better bioinformatics tools with batteries included 🍐 BOSCBernie Pope

02:15 EDT

Enhancing rigor and reproducibility in biomedical research 🍐 BOSCJaqueline J. Brito

02:20 EDT

Secondary analysis of publicly available omics data across almost 3 million publications 🍐 BOSCNicholas Darci-Maher

02:25 EDT

Q&A 🍐 BOSCHeather Wiencko

02:30 EDT

CrowdGO: Gene Ontology prediction using a meta approach 🍐 BOSCMaarten Reijnders

02:35 EDT

Goslin - A grammar of succinct lipid nomenclature 🍐 BOSCNils Hoffmann

02:40 EDT

Executable Research Article (ERA): Enrich a research paper with code and data 🍐 BOSCEmmy Tsang

02:55 EDT

Q&A 🍐 BOSCHeather Wiencko

22:00 EDT

BCC2020 Conference Day 2: East Joint

22:15 EDT

East Keynote 2: How Open Source has Changed the World JointLincoln Stein

23:16 EDT

Building open source communities and empowering new contributors 🍐 BOSCYo Yehudi

23:30 EDT

Codeathons as a tool for improving diversity in computer science 🍐 BOSCAllissa Dillman

23:35 EDT

CyVerse Learning Institute’s foundational open science skills workshop 🍐 BOSCTyson Swetnam

23:40 EDT

Open Life Science: Empowering early career researchers to become open science leaders 🍐 BOSCBérénice Batut • Yo Yehudi • Malvika Sharan

23:55 EDT

Q&A 🍐 BOSCNomi Harris
 
Tuesday, July 21
 

01:00 EDT

P2-08: : Deep-EMSCAN: Deep Learning Approach to Recover Combination of Biologically Significant DNA Motifs 🍐 JointSonika Tyagi

02:00 EDT

BOSC East Session 4a: Developer tools & libraries 🍐 BOSCHeather Wiencko

02:01 EDT

Shesmu: A bioinformatics orchestration tool 🍐 BOSCAndre Masella

02:15 EDT

SIMD Everywhere: portable implementations of SIMD intrinsics 🍐 BOSCEvan Nemerson

02:20 EDT

Biopython Project Update 2020 🍐 BOSCPeter Cock

02:25 EDT

Q&A for session B4a 🍐 BOSCHeather Wiencko

02:30 EDT

BOSC East Session 4b: Visualization 🍐 BOSCHeather Wiencko

02:35 EDT

pyGenomeTracks: Reproducible plots for multivariate genomic data sets 🍐 BOSCLucille Delisle

02:40 EDT

MultiQC updates: Visualising results from common bioinformatics tools 🍐 BOSCPhil Ewels

02:45 EDT

The Xena Geneset Viewer provides a visual comparison of pathways over public genomic cancer data 🍐 BOSCNathan Dunn

02:50 EDT

New features for GRNsight: a web application for visualizing models of small- to medium-scale gene regulatory networks 🍐 BOSCKam D. Dahlquist

22:00 EDT

BCC2020 Conference Day 3: East Joint BOSC East Session 5: Workflow management systems 🍐 BOSCChris Fields

22:01 EDT

Evolution of the Nextflow workflow management system 🍐 BOSCEvan Floden

22:15 EDT

What’s new with nf-core: community-built bioinformatics pipelines 🍐 BOSCPhil Ewels

22:20 EDT

H3AGWAS: Portable GWAS workflows for African science 🍐 BOSCBrandenburg Jean-Tristan

22:25 EDT

Q&A 🍐 BOSCChris Fields

22:30 EDT

CWL-Airflow: a lightweight pipeline manager supporting Common Workflow Language 🍐 BOSCMichael Kotliar

22:45 EDT

Challenges in implementing Janis: A generator for CWL and WDL pipelines 🍐 BOSCMichael Franklin

22:50 EDT

Rapidly creating portable pipelines with aCLImatise 🍐 BOSCMichael Milton

22:55 EDT

The all-new Genomics Virtual Lab 🍐 BOSCThe Other Enis Afgan

23:10 EDT

Q&A 🍐 BOSCChris Fields
 
Wednesday, July 22
 

00:31 EDT

Serratus: Ultra-deep search for novel coronaviruses 🍐 JointArtem Babaian

00:45 EDT

MALVIRUS: viral variant calling made easy 🍐 JointYuri Pirola

00:50 EDT

Development of TranSMART and Applications in Biomedical Research 🍐 JointPeter Rice

00:55 EDT

ViPRA-Haplo: de novo reconstruction of viral populations using paired end sequencing data 🍐 JointWeiling Li

01:00 EDT

Q&A Joint

01:05 EDT

COVID-19 PubSeq: Public SARS-CoV-2 Sequence Resource 🍐 JointAndrea Guarracino

01:10 EDT

Designing and executing workflows for virtual screening of the SARS-CoV-2 main protease 🍐 JointSimon Bray

01:25 EDT

Analyzing the Nanopore data of SARS-CoV-2 within the Galaxy framework 🌀 JointNathan Roach

01:40 EDT

Q&A Joint

02:00 EDT

East Keynote 3: Biased by Default: Exploring Discrimination in Research Code JointAbigail Cabunoc Mayes

02:45 EDT

Closing JointGareth Price • Frederik Coppens • Peter Cock • Harpreet Singh • Nomi Harris
 
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