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➞ Registration closed July 15.

BCC2020 is online, global, and affordable. The meeting and training are now done, and the CoFest is under way.

The 2020 Bioinformatics Community Conference brings together the Bioinformatics Open Source Conference (BOSC) and the Galaxy Community Conference into a single event featuring training, a meeting, and a CollaborationFest. Events run from July 17 through July 25, and is held in both the eastern and western hemispheres.

avatar for Matúš Kalas

Matúš Kalas

University of Bergen
Senior Engineer
Norway
Websitehttps://orcid.org/0000-0002-1509-4981
Attending GCC2022 virtually 🌌

Working on open science|source|society|education, EDAM ontology, ELIXIR Norway, Bio.tools, ...

My Friends

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Friday, July 17
 

09:01 EDT

Getting started in Git using GitHub Desktop Training AYo Yehudi

15:31 EDT

Import, handle, visualize and analyze biodiversity data in Galaxy Training CYvan Le Bras

21:01 EDT

Command Line Essentials for Bioinformaticians Training EIra Cooke • Wytamma Wirth • Jia Zhang • Legana Fingerhut
 
Saturday, July 18
 

00:16 EDT

Bionitio: building better bioinformatics tools with batteries included. I Training BAnna Syme • Bernie Pope

03:31 EDT

Bionitio: building better bioinformatics tools with batteries included II Training BAnna Syme • Bernie Pope

12:16 EDT

Getting your hands on Climate data Training EAnne Fouilloux

15:31 EDT

Bioinformatics in Education Training EUwe Hilgert • Isabella Viney
 
Sunday, July 19
 

00:16 EDT

Automating Practical Classroom with GitHub Classroom Training CMuhammad Farhan Sjaugi • Abd Rahim

03:31 EDT

Introduction to Machine Learning Training EAlireza Khanteymoori • Anup Kumar

10:01 EDT

Welcome JointDave Clements • Nomi Harris

10:30 EDT

West Keynote 1: How Open Source has Changed the World JointLincoln Stein

11:31 EDT

Cooperative bacteriophage genome annotation in the biologist-friendly Galaxy and Apollo platforms 🌀 GalaxyJolene Ramsey

11:50 EDT

THAPBI PICT -- a metabarcoding analysis pipeline developed as a Phytophthora ITS1 Classification Tool 🍐 BOSCPeter Cock

12:10 EDT

Integrating and analyzing genotype, phenotype, and environmental data through CartograTree and Tripal Galaxy 🌀 GalaxyIrene Cobo Streamlining accessibility and computability of large-scale genomic datasets with the NHGRI genome data science Analysis, Visualization, and Informatics Lab-Space (ANVIL) 🍐 BOSCMichael Schatz

12:25 EDT

Tripal: an example of successful open-source distributed team development 🍐 BOSCMargaret Staton

13:00 EDT

P3-01: : Earth System Modelling and data analysis with Galaxy Climate Science Workbench 🌀 JointAnne Fouilloux

14:00 EDT

Galaxy West Session 2: Extending the Galaxy ecosystem 🌀 GalaxyJennifer Harrow

14:01 EDT

Automated generation of training materials from markdown documents 🌀 GalaxyDelphine Lariviere Bionitio: building better bioinformatics tools with batteries included 🍐 BOSCBernie Pope

14:15 EDT

Enhancing rigor and reproducibility in biomedical research 🍐 BOSCJaqueline J. Brito Integrating refgenie and Galaxy for reference data management: a proposal for IDC 🌀 GalaxyIgnacio Eguinoa

14:35 EDT

Goslin - A grammar of succinct lipid nomenclature 🍐 BOSCNils Hoffmann

14:40 EDT

Executable Research Article (ERA): Enrich a research paper with code and data 🍐 BOSCEmmy Tsang Galaxy, Selenium, and End-to-end Testing 🌀 GalaxyOleg Zharkov

15:15 EDT

BoF: Parenting during Coronavirus JointAssunta DeSanto BoF: Where is the bar? JointUla Afgan
 
Monday, July 20
 

09:00 EDT

BoF: A code of conduct for the OBF JointBastian Greshake Tzovaras • Malvika Sharan

10:15 EDT

West Keynote 2: Open minds bring open collaborations JointPrashanth Suravajhala

11:15 EDT

BOSC West Session 3: Building Open Source Communities (BOSC) 🍐 BOSCYo Yehudi

11:16 EDT

Building open source communities and empowering new contributors 🍐 BOSCYo Yehudi

11:30 EDT

Codeathons as a tool for improving diversity in computer science 🍐 BOSCAllissa Dillman

11:35 EDT

CyVerse Learning Institute’s foundational open science skills workshop 🍐 BOSCTyson Swetnam

11:40 EDT

Open Life Science: Empowering early career researchers to become open science leaders 🍐 BOSCBérénice Batut • Yo Yehudi • Malvika Sharan

11:55 EDT

Q&A 🍐 BOSCYo Yehudi

12:40 EDT

Software Sustainability Institute Gold Sponsor Talk: Most code is cr#p and that’s okay JointNeil Chue Hong

13:00 EDT

P1-05: : Automated generation of training materials from markdown documents 🌀 JointDelphine Lariviere P1-12: : Codeathons as a tool for improving diversity in computer science 🍐 JointAllissa Dillman P3-03: : EDAM: the ontology of bioinformatics operations, topics, data, and formats (update 2020) 🍐 JointMatúš Kalas P4-01: : Functionally Assembled Terrestrial Ecosystem Simulator (FATES) with Community Land Model in Galaxy 🌀 JointAnne Fouilloux • Hui Tang • Sonya Geange

14:01 EDT

Applying Pulsar: a democratised national and international remote compute network for Galaxy 🌀 GalaxyGianmauro Cuccuru

14:15 EDT

Galaxy Community Update 🌀 GalaxySimon Gladman • Gareth Price • Bjorn Gruning • Michael Schatz • Anton Nekrutenko • Jeremy Goecks • The Other Enis Afgan • Daniel Blankenberg SIMD Everywhere: portable implementations of SIMD intrinsics 🍐 BOSCEvan Nemerson

14:20 EDT

Biopython Project Update 2020 🍐 BOSCPeter Cock

14:35 EDT

pyGenomeTracks: Reproducible plots for multivariate genomic data sets 🍐 BOSCLucille Delisle

14:40 EDT

MultiQC updates: Visualising results from common bioinformatics tools 🍐 BOSCPhil Ewels

17:00 EDT

BOSC Happy Hour West! Joint
 
Tuesday, July 21
 

01:00 EDT

GigaScience Sponsor Table JointKen Cho • Scott Edmunds • Laurie Goodman P3-03: : EDAM: the ontology of bioinformatics operations, topics, data, and formats (update 2020) 🍐 JointMatúš Kalas Poster / Demo East Session 2 Joint

02:01 EDT

Applying Pulsar: a democratised national and international remote compute network for Galaxy 🌀 GalaxyGianmauro Cuccuru

02:15 EDT

Galaxy Community Update 🌀 GalaxySimon Gladman • Gareth Price • Michael Schatz • Bjorn Gruning • Anton Nekrutenko • Jeremy Goecks • The Other Enis Afgan • Daniel Blankenberg SIMD Everywhere: portable implementations of SIMD intrinsics 🍐 BOSCEvan Nemerson

02:50 EDT

Q & A 🌀 GalaxyHarpreet Singh

09:00 EDT

BoF: FAIR Computational Workflows JointIgnacio Eguinoa

10:00 EDT

Galaxy West Session 5: Galaxy beyond genomics 🌀 GalaxyYvan Le Bras

10:01 EDT

Evolution of the Nextflow workflow management system 🍐 BOSCEvan Floden

10:02 EDT

Producing biodiversity indicators from citizen science projects: update of birds and bats monitoring schemes on Galaxy-E 🌀 GalaxyColine Royaux

10:15 EDT

Essential biodiversity variables on Galaxy: implementing the PAMPA application 🌀 GalaxyColine Royaux What’s new with nf-core: community-built bioinformatics pipelines 🍐 BOSCPhil Ewels

10:20 EDT

H3AGWAS: Portable GWAS workflows for African science 🍐 BOSCBrandenburg Jean-Tristan

10:25 EDT

Evaluating customized database generation methods for metaproteomics analysis within the Galaxy platform. 🌀 GalaxySubina Mehta

10:30 EDT

An automated, accessible proteogenomic pipeline for high confidence detection and rigorous validation of novel peptide sequence variants in Galaxy-P 🌀 GalaxyAndrew T. Rajczewski CWL-Airflow: a lightweight pipeline manager supporting Common Workflow Language 🍐 BOSCMichael Kotliar

10:35 EDT

Q & A 🌀 GalaxyYvan Le Bras

10:40 EDT

Galaxy enables FAIR mass spectrometry imaging data analysis of urothelial carcinoma tissues 🌀 GalaxyMelanie Föll

10:45 EDT

Challenges in implementing Janis: A generator for CWL and WDL pipelines 🍐 BOSCMichael Franklin Democratizing DIA analysis on public cloud infrastructures via Galaxy 🌀 GalaxyMatthias Fahrner

10:50 EDT

EOSC-Nordic Climate Science Workbench roadmap 🌀 GalaxyAnne Fouilloux Rapidly creating portable pipelines with aCLImatise 🍐 BOSCMichael Milton

10:55 EDT

Functionally Assembled Terrestrial Ecosystem Simulator (FATES) with Community Land Model in Galaxy 🌀 GalaxyAnne Fouilloux • Hui Tang • Sonya Geange The all-new Genomics Virtual Lab 🍐 BOSCThe Other Enis Afgan

11:10 EDT

Q & A 🌀 GalaxyYvan Le Bras

11:30 EDT

P2-03: : COVID-19 PubSeq: Public SARS-CoV-2 Sequence Resource 🍐 JointAndrea Guarracino P2-06: : CWL-Airflow: a lightweight pipeline manager supporting Common Workflow Language 🍐 JointMichael Kotliar P2-11: : Development of TranSMART and Applications in Biomedical Research 🍐 JointPeter Rice P2-12: : Dnpatterntools suite for nucleosome positioning sequence patterns 🌀 JointErinija Pranckeviciene P3-05: : EOSC-Nordic Climate Science Workbench roadmap 🌀 JointAnne Fouilloux P3-08: : Evolution of the Nextflow workflow management system 🍐 JointEvan Floden P4-02: : Galaxy enables FAIR mass spectrometry imaging data analysis of urothelial carcinoma tissues 🌀 JointMelanie Föll P5-11: : Producing biodiversity indicators from citizen science projects: update of birds and bats monitoring schemes on Galaxy-E 🌀 JointColine Royaux P6-05: : SIMD Everywhere: portable implementations of SIMD intrinsics 🍐 JointEvan Nemerson P6-07: : Survey of metaproteomics software tools for functional microbiome analysis 🌀 JointRay Sajulga P6-09: : Testing and investigating deep learning models for promoter recognition 🍐 JointRaul Ivan Perez Martell P7-02: : ViralMSA: massively scalable reference-guided multiple sequence alignment of viral genomes 🍐 JointNiema Moshiri P7-04: : What’s new with nf-core: community-built bioinformatics pipelines 🍐 JointPhil Ewels

12:31 EDT

Serratus: Ultra-deep search for novel coronaviruses 🍐 JointArtem Babaian

12:45 EDT

MALVIRUS: viral variant calling made easy 🍐 JointYuri Pirola

12:55 EDT

ViPRA-Haplo: de novo reconstruction of viral populations using paired end sequencing data 🍐 JointWeiling Li

13:00 EDT

Q&A JointMorgan Taschuk

13:05 EDT

COVID-19 PubSeq: Public SARS-CoV-2 Sequence Resource 🍐 JointAndrea Guarracino

13:10 EDT

Designing and executing workflows for virtual screening of the SARS-CoV-2 main protease 🍐 JointSimon Bray

13:25 EDT

Analyzing the Nanopore data of SARS-CoV-2 within the Galaxy framework 🌀 JointNathan Roach

13:40 EDT

Q&A JointMorgan Taschuk

14:00 EDT

West Keynote 3: Biased by Default: Exploring Discrimination in Research Code JointAbigail Cabunoc Mayes

14:45 EDT

Closing remarks JointDave Clements • Nomi Harris • Peter Cock • Michael Heuer • Frederik Coppens

23:30 EDT

P4-10: : Identification of differentially expressed genes between cultivar and weedy type in soybean plant 🌀 JointPrakash Basnet
 
Wednesday, July 22
 

04:15 EDT

CollaborationFest: Core Joint
 
Friday, July 24
 

01:00 EDT

CollaborationFest: Encore Joint
 
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