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➞ Registration closed July 15.

BCC2020 is online, global, and affordable. The meeting and training are now done, and the CoFest is under way.

The 2020 Bioinformatics Community Conference brings together the Bioinformatics Open Source Conference (BOSC) and the Galaxy Community Conference into a single event featuring training, a meeting, and a CollaborationFest. Events run from July 17 through July 25, and is held in both the eastern and western hemispheres.

avatar for Abhinav Mishra

Abhinav Mishra

Sunday, July 19
 

13:00 EDT

Broad Institute Data Sciences Platform Sponsor Table JointGeraldine Van der Auwera P1-07: : Automating the annotation of biological data through semantic technologies and machine learning 🍐 JointLorcÑn Pigott-Dix P1-10: : BLAST in a container 🍐 JointTom Madden P3-12: : Full-factorial examination of high-throughput microbiome sequencing workflows from sample preparation to bioinformatic analysis 🍐 JointTravis J. De Wolfe

14:30 EDT

Implementation of the IEEE-2791-2020 standard (BioCompute Objects) in Galaxy via workflow invocations πŸŒ€ GalaxyCharles Hadley King

22:01 EDT

Welcome JointNomi Harris • Gareth Price

22:30 EDT

East Keynote 1: Open minds bring open collaborations JointPrashanth Suravajhala

23:30 EDT

BOSC East Session 1a: Sequencing & analysis 🍐 BOSCMoni MuΓ±oz-Torres Galaxy East Session 1: Applications and use cases πŸŒ€ GalaxyMaria Doyle

23:31 EDT

Digital Expression Explorer 2: a repository of 8 trillion uniformly processed RNA-seq reads and still counting 🍐 BOSCMark Ziemann

23:45 EDT

Community genome annotation integrates with Galaxy via Apollo providing greater integration and more functional annotation options πŸŒ€ GalaxyNathan Dunn

23:50 EDT

Computational chemistry analysis using Galaxy: Exploring antigen-antibody binding patterns for MUC1-AR20.5 πŸŒ€ GalaxyChris Barnett

23:55 EDT

Please contribute to FASTQE so I don’t have to 🍐 BOSCAndrew Lonsdale
 
Monday, July 20
 

00:05 EDT

Q & A πŸŒ€ GalaxyMaria Doyle SigBio-Shiny: A standalone interactive application for detecting biological significance on a set of genes 🍐 BOSCSangram Keshari Sahu

00:10 EDT

Streamlining accessibility and computability of large-scale genomic datasets with the NHGRI genome data science Analysis, Visualization, and Informatics Lab-Space (ANVIL) 🍐 BOSCMichael Schatz

00:20 EDT

Q&A for session B1a 🍐 BOSCMoni Muñoz-Torres

00:25 EDT

Automated real-time data analysis and visualizations for the SARS-CoV-2/Covid19 portal πŸŒ€ GalaxyMarius van den Beek BOSC East Session 1b: Open data 🍐 BOSCMoni MuΓ±oz-Torres

00:30 EDT

BioThings Explorer: A platform for distributed knowledge integration across biomedical APIs 🍐 BOSCJiwen Xin

00:35 EDT

Don’t worry about data management - use Cenzontle 🍐 BOSCAsis Hallab

00:40 EDT

Q & A πŸŒ€ GalaxyMaria Doyle Q&A for session B1b 🍐 BOSCMoni MuΓ±oz-Torres

01:00 EDT

eLife Innovation Sponsor Table JointEmmy Tsang P1-01: : A composable rootless container system for genomic analysis pipelines 🍐 JointXu Yang P6-01: : pyGenomeTracks: Reproducible plots for multivariate genomic data sets 🍐 JointLucille Delisle P6-04: : SigBio-Shiny: A standalone interactive application for detecting biological significance on a set of genes 🍐 JointSangram Keshari Sahu P6-12: : Towards more FAIR research software 🍐 JointMateusz Kuzak

02:00 EDT

BOSC East Session 2: Reproducibility and standards 🍐 BOSCHeather Wiencko Galaxy Session 2: Extending the Galaxy Ecosystem πŸŒ€ GalaxySimon Gladman

02:01 EDT

Automated generation of training materials from markdown documents πŸŒ€ GalaxyDelphine Lariviere Bionitio: building better bioinformatics tools with batteries included 🍐 BOSCBernie Pope

02:15 EDT

Enhancing rigor and reproducibility in biomedical research 🍐 BOSCJaqueline J. Brito

02:20 EDT

Secondary analysis of publicly available omics data across almost 3 million publications 🍐 BOSCNicholas Darci-Maher

02:25 EDT

Q & A πŸŒ€ GalaxySimon Gladman Q&A 🍐 BOSCHeather Wiencko

02:30 EDT

CrowdGO: Gene Ontology prediction using a meta approach 🍐 BOSCMaarten Reijnders

02:40 EDT

Executable Research Article (ERA): Enrich a research paper with code and data 🍐 BOSCEmmy Tsang

02:55 EDT

Q&A 🍐 BOSCHeather Wiencko

13:00 EDT

P3-03: : EDAM: the ontology of bioinformatics operations, topics, data, and formats (update 2020) 🍐 JointMatΓΊΕ‘ KalaΕ‘ P4-11: : Implementation of the IEEE-2791-2020 standard (BioCompute Objects) in Galaxy via workflow invocations πŸŒ€ JointCharles Hadley King P5-08: : OpenBio.eu: An extrovert bioinformatics research object repository and workflow management system 🍐 JointAlexandros Kanterakis P6-06: : sRNAflow: a tool for analysis of small RNA-seq data 🍐 JointPawel Zayakin P7-01: : ViPRA-Haplo: de novo reconstruction of viral populations using paired end sequencing data) 🍐 JointWeiling Li

22:00 EDT

BCC2020 Conference Day 2: East Joint

22:01 EDT

Day 2 East Welcome JointGareth Price

22:15 EDT

East Keynote 2: How Open Source has Changed the World JointLincoln Stein

23:15 EDT

BOSC East Session 3: Building Open Source Communities (BOSC) 🍐 BOSCNomi Harris

23:40 EDT

Open Life Science: Empowering early career researchers to become open science leaders 🍐 BOSCBΓ©rΓ©nice Batut • Yo Yehudi • Malvika Sharan

23:55 EDT

Q&A 🍐 BOSCNomi Harris
 
Tuesday, July 21
 

00:20 EDT

AWS Gold Sponsor Talk: Scalable genomics data analysis in the cloud JointLee Pang

00:40 EDT

Software Sustainability Institute Gold Sponsor Talk: Most code is cr#p and that’s okay JointNeil Chue Hong

01:00 EDT

eLife Innovation Sponsor Table JointEmmy Tsang P4-04: : Genpei: an implementation of GA4GH Workflow Execution Service Standard as a microservice 🍐 JointHirotaka Suetake

02:00 EDT

BOSC East Session 4a: Developer tools & libraries 🍐 BOSCHeather Wiencko

02:01 EDT

Shesmu: A bioinformatics orchestration tool 🍐 BOSCAndre Masella

02:15 EDT

SIMD Everywhere: portable implementations of SIMD intrinsics 🍐 BOSCEvan Nemerson

02:20 EDT

Biopython Project Update 2020 🍐 BOSCPeter Cock

02:30 EDT

BOSC East Session 4b: Visualization 🍐 BOSCHeather Wiencko Introducing App Store for IGB, a site for sharing and installing extensions for Integrated Genome Browser from BioViz.org 🍐 BOSCAnn Loraine

02:35 EDT

pyGenomeTracks: Reproducible plots for multivariate genomic data sets 🍐 BOSCLucille Delisle

02:40 EDT

MultiQC updates: Visualising results from common bioinformatics tools 🍐 BOSCPhil Ewels

02:45 EDT

The Xena Geneset Viewer provides a visual comparison of pathways over public genomic cancer data 🍐 BOSCNathan Dunn

02:50 EDT

New features for GRNsight: a web application for visualizing models of small- to medium-scale gene regulatory networks 🍐 BOSCKam D. Dahlquist

02:55 EDT

Q&A for session B4b 🍐 BOSCHeather Wiencko

22:00 EDT

BCC2020 Conference Day 3: East Joint BOSC East Session 5: Workflow management systems 🍐 BOSCChris Fields

22:01 EDT

Evolution of the Nextflow workflow management system 🍐 BOSCEvan Floden

22:15 EDT

What’s new with nf-core: community-built bioinformatics pipelines 🍐 BOSCPhil Ewels

22:20 EDT

H3AGWAS: Portable GWAS workflows for African science 🍐 BOSCBrandenburg Jean-Tristan

22:25 EDT

Q&A 🍐 BOSCChris Fields

22:30 EDT

CWL-Airflow: a lightweight pipeline manager supporting Common Workflow Language 🍐 BOSCMichael Kotliar

22:45 EDT

Challenges in implementing Janis: A generator for CWL and WDL pipelines 🍐 BOSCMichael Franklin

22:50 EDT

Rapidly creating portable pipelines with aCLImatise 🍐 BOSCMichael Milton

22:55 EDT

The all-new Genomics Virtual Lab 🍐 BOSCEnis Afgan

23:10 EDT

Q&A 🍐 BOSCChris Fields

23:30 EDT

P3-02: : ECRcentral: A central platform for early-career researchers 🍐 JointAziz Khan P7-04: : What’s new with nf-core: community-built bioinformatics pipelines 🍐 JointPhil Ewels
 
Wednesday, July 22
 

00:50 EDT

Development of TranSMART and Applications in Biomedical Research 🍐 JointPeter Rice

00:55 EDT

ViPRA-Haplo: de novo reconstruction of viral populations using paired end sequencing data 🍐 JointWeiling Li

02:00 EDT

East Keynote 3: Biased by Default: Exploring Discrimination in Research Code JointAbigail Cabunoc Mayes

02:45 EDT

Closing JointGareth Price • Frederik Coppens • Peter Cock • Harpreet Singh • Nomi Harris
 
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