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➞ Registration closed July 15.

BCC2020 is online, global, and affordable. The meeting and training are now done, and the CoFest is under way.

The 2020 Bioinformatics Community Conference brings together the Bioinformatics Open Source Conference (BOSC) and the Galaxy Community Conference into a single event featuring training, a meeting, and a CollaborationFest. Events run from July 17 through July 25, and is held in both the eastern and western hemispheres.

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Friday, July 17
 

09:01 EDT

How to use Reactome data, tools and web services Training BJoel Weiser • Robin Haw • Solomon Shorser • Justin Cook

12:16 EDT

Handling integrated biological data using Python, Jupyter, and InterMine Training Asergio contrino • Yo Yehudi • Rachel Lyne R / Bioconductor in the Cloud Training EMartin Morgan • Nitesh Turaga • Lori Shepherd Scaling genomic analysis with Glow and Apache Spark Training BHenry Davidge • Karen Feng • Rishi Ghose • Michael Shtelma • Frank Nothaft • Kiavash Kianfar • Amir Kermany • Will Brandler

15:31 EDT

Processing of Single Cell RNA-Seq Data with Galaxy Training EBjorn Gruning • Mehmet Tekman • Hans-Rudolf Hotz
 
Saturday, July 18
 

09:01 EDT

Introduction to Machine Learning Training AAlireza Khanteymoori • Anup Kumar RNA-Seq analysis with AskOmics Interactive Tool Training BAnthony Bretaudeau • Xavier Garnier

12:16 EDT

Reference data with CVMFS and remote jobs with Pulsar Training DGianmauro Cuccuru • Nate Coraor • Helena Rasche

15:31 EDT

Proteomic data analysis in Galaxy Training DMelanie Föll • Matthias Fahrner
 
Sunday, July 19
 

10:00 EDT

BCC2020 Conference Day 1: West Joint

10:01 EDT

Welcome JointDave Clements • Nomi Harris

10:30 EDT

West Keynote 1: How Open Source has Changed the World JointLincoln Stein

11:30 EDT

BOSC West Session 1a: Sequencing & analysis 🍐 BOSCChris Fields Galaxy West Session 1: Applications and use cases 🌀 GalaxyDelphine Lariviere

11:31 EDT

Digital Expression Explorer 2: a repository of 8 trillion uniformly processed RNA-seq reads and still counting 🍐 BOSCMark Ziemann

12:10 EDT

Integrating and analyzing genotype, phenotype, and environmental data through CartograTree and Tripal Galaxy 🌀 GalaxyIrene Cobo Streamlining accessibility and computability of large-scale genomic datasets with the NHGRI genome data science Analysis, Visualization, and Informatics Lab-Space (ANVIL) 🍐 BOSCMichael Schatz
 
Monday, July 20
 

10:00 EDT

BCC2020 Conference Day 2: West Joint

11:30 EDT

Codeathons as a tool for improving diversity in computer science 🍐 BOSCAllissa Dillman Custos: Enabling User Authentication via External Institutional Identities 🌀 GalaxyJuleen Graham

11:35 EDT

CyVerse Learning Institute’s foundational open science skills workshop 🍐 BOSCTyson Swetnam On-demand Galaxy with Laniakea: results and future perspectives 🌀 GalaxyMarco Antonio Tangaro

11:40 EDT

HiSCiAp and Human Cell Atlas Galaxy instance: User-friendly, scalable tools and workflows for single-cell analysis 🌀 GalaxyPablo Moreno Open Life Science: Empowering early career researchers to become open science leaders 🍐 BOSCBérénice Batut • Yo Yehudi • Malvika Sharan

12:20 EDT

AWS Gold Sponsor Talk: Scalable genomics data analysis in the cloud JointLee Pang

12:40 EDT

Software Sustainability Institute Gold Sponsor Talk: Most code is cr#p and that’s okay JointNeil Chue Hong

13:00 EDT

P1-09: : BioViz Connect: Web application linking CyVerse cloud resources to genomic visualization in the Integrated Genome Browser 🍐 JointNowlan Freese P1-12: : Codeathons as a tool for improving diversity in computer science 🍐 JointAllissa Dillman P2-05: : CrowdGO: a wisdom of the crowd-based Gene Ontology prediction tool 🍐 JointMaarten Reijnders P3-03: : EDAM: the ontology of bioinformatics operations, topics, data, and formats (update 2020) 🍐 JointMatúš Kalas P3-06: : eSPiGA: a population genomic analyses package with graphical interface 🍐 JointSebastian E. Ramos-Onsins P4-09: : HiSCiAp and Human Cell Atlas Galaxy instance: User-friendly, scalable tools and workflows for single-cell analysis 🌀 JointPablo Moreno

14:00 EDT

BOSC West Session 4a: Developer tools & libraries 🍐 BOSCKarsten Hokamp

14:01 EDT

Shesmu: A bioinformatics orchestration tool 🍐 BOSCAndre Masella

14:20 EDT

Biopython Project Update 2020 🍐 BOSCPeter Cock

14:35 EDT

pyGenomeTracks: Reproducible plots for multivariate genomic data sets 🍐 BOSCLucille Delisle

14:40 EDT

MultiQC updates: Visualising results from common bioinformatics tools 🍐 BOSCPhil Ewels

14:45 EDT

The Xena Geneset Viewer provides a visual comparison of pathways over public genomic cancer data 🍐 BOSCNathan Dunn
 
Tuesday, July 21
 

10:00 EDT

BCC2020 Conference Day 3: West Joint

10:01 EDT

Evolution of the Nextflow workflow management system 🍐 BOSCEvan Floden

10:15 EDT

Essential biodiversity variables on Galaxy: implementing the PAMPA application 🌀 GalaxyColine Royaux What’s new with nf-core: community-built bioinformatics pipelines 🍐 BOSCPhil Ewels

10:20 EDT

H3AGWAS: Portable GWAS workflows for African science 🍐 BOSCBrandenburg Jean-Tristan VINYL: Variant prIoritizatioN bY survivaL analysis 🌀 GalaxyMatteo Chiara

10:25 EDT

Evaluating customized database generation methods for metaproteomics analysis within the Galaxy platform. 🌀 GalaxySubina Mehta

10:30 EDT

An automated, accessible proteogenomic pipeline for high confidence detection and rigorous validation of novel peptide sequence variants in Galaxy-P 🌀 GalaxyAndrew T. Rajczewski

10:40 EDT

Galaxy enables FAIR mass spectrometry imaging data analysis of urothelial carcinoma tissues 🌀 GalaxyMelanie Föll

10:45 EDT

Challenges in implementing Janis: A generator for CWL and WDL pipelines 🍐 BOSCMichael Franklin

10:55 EDT

The all-new Genomics Virtual Lab 🍐 BOSCThe Other Enis Afgan

11:30 EDT

P1-04: : An automated, accessible proteogenomic pipeline for high confidence detection and rigorous validation of novel peptide sequence variants in Galaxy-P 🌀 JointAndrew T. Rajczewski
 
Wednesday, July 22
 

04:15 EDT

CollaborationFest: Core Joint
 
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