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BCC2020

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➞ Registration closed July 15.

BCC2020 is online, global, and affordable. The meeting and training are now done, and the CoFest is under way.

The 2020 Bioinformatics Community Conference brings together the Bioinformatics Open Source Conference (BOSC) and the Galaxy Community Conference into a single event featuring training, a meeting, and a CollaborationFest. Events run from July 17 through July 25, and is held in both the eastern and western hemispheres.

Sangram Keshari Sahu

Genomics Data Scientist
India

My Friends

15:31 EDT

Building communities with open source + open science Training AMalvika Sharan • Yo Yehudi Dockstore Fundamentals: Introduction to Docker and Descriptors for Reproducible Analysis Training DLouise Cabansay • Andrew Duncan • Denis Yuen • Gary Lau • Charles Overbeck • Natalie Perez Introduction to Galaxy Administration III Training BSergey Golitsynskiy • Martin Čech • Nate Coraor Processing of Single Cell RNA-Seq Data with Galaxy Training EBjörn Grüning • Mehmet Tekman • Hans-Rudolf Hotz

21:01 EDT

Command Line Essentials for Bioinformaticians Training EIra Cooke • Wytamma Wirth • Jia Zhang • Legana Fingerhut Introduction to Galaxy Administration I Training DSimon Gladman • Kiran K Telukunta • Nicholas Rhodes • Catherine Bromhead

00:16 EDT

Bionitio: building better bioinformatics tools with batteries included. I Training BAnna Syme • Bernie Pope

09:01 EDT

RNA-Seq analysis with AskOmics Interactive Tool Training BAnthony Bretaudeau • Xavier Garnier Train the Galaxy Trainer Training ESaskia Hiltemann • Delphine Lariviere • Helena Rasche

12:16 EDT

Scripting Galaxy with BioBlend Training AMarius van den Beek • Dannon Baker • Nicola Soranzo

10:00 EDT

BCC2020 Conference Day 1: West Joint

10:01 EDT

Welcome JointDave Clements • Nomi Harris

10:30 EDT

West Keynote 1: How Open Source has Changed the World JointLincoln Stein

11:30 EDT

BOSC West Session 1a: Sequencing & analysis 🍐 BOSCChris Fields

11:31 EDT

Digital Expression Explorer 2: a repository of 8 trillion uniformly processed RNA-seq reads and still counting 🍐 BOSCMark Ziemann

11:55 EDT

Please contribute to FASTQE so I don’t have to 🍐 BOSCAndrew Lonsdale

12:05 EDT

SigBio-Shiny: A standalone interactive application for detecting biological significance on a set of genes 🍐 BOSCSangram Keshari Sahu

12:10 EDT

Streamlining accessibility and computability of large-scale genomic datasets with the NHGRI genome data science Analysis, Visualization, and Informatics Lab-Space (ANVIL) 🍐 BOSCMichael Schatz

12:25 EDT

Automated real-time data analysis and visualizations for the SARS-CoV-2/Covid19 portal 🌀 GalaxyMarius van den Beek Tripal: an example of successful open-source distributed team development 🍐 BOSCMargaret Staton

13:00 EDT

P1-08: : BioThings Explorer: A platform for distributed knowledge integration across biomedical APIs 🍐 JointJiwen Xin P1-10: : BLAST in a container 🍐 JointTom Madden P2-10: : Deploying Galaxy workflows in containers 🌀 JointBert Droesbeke P6-04: : SigBio-Shiny: A standalone interactive application for detecting biological significance on a set of genes 🍐 JointSangram Keshari Sahu

14:00 EDT

BOSC West Session 2: Reproducibility and standards 🍐 BOSCMoni Muñoz-Torres • Jessica Maia Galaxy West Session 2: Extending the Galaxy ecosystem 🌀 GalaxyJennifer Harrow

14:30 EDT

CrowdGO: Gene Ontology prediction using a meta approach 🍐 BOSCMaarten Reijnders Implementation of the IEEE-2791-2020 standard (BioCompute Objects) in Galaxy via workflow invocations 🌀 GalaxyCharles Hadley King

22:30 EDT

East Keynote 1: Open minds bring open collaborations JointPrashanth N Suravajhala

00:05 EDT

SigBio-Shiny: A standalone interactive application for detecting biological significance on a set of genes 🍐 BOSCSangram Keshari Sahu

01:00 EDT

P2-02: : Computational meta-analysis of transcriptome in Tetrology of Fallot reveals dysregulated hubs and pathways 🌀 JointSona Charles P6-04: : SigBio-Shiny: A standalone interactive application for detecting biological significance on a set of genes 🍐 JointSangram Keshari Sahu

09:00 EDT

BoF: Galaxy-India: Launch and Outreach Plans JointAnshu Bhardwaj • Harpreet Singh

10:00 EDT

BCC2020 Conference Day 2: West Joint

10:01 EDT

Day 2 Welcome JointDave Clements • Morgan Taschuk

10:15 EDT

West Keynote 2: Open minds bring open collaborations JointPrashanth N Suravajhala

11:16 EDT

Building open source communities and empowering new contributors 🍐 BOSCYo Yehudi

11:40 EDT

Open Life Science: Empowering early career researchers to become open science leaders 🍐 BOSCBérénice Batut • Yo Yehudi • Malvika Sharan

13:00 EDT

P1-05: : Automated generation of training materials from markdown documents 🌀 JointDelphine Lariviere P1-12: : Codeathons as a tool for improving diversity in computer science 🍐 JointAllissa Dillman P5-08: : OpenBio.eu: An extrovert bioinformatics research object repository and workflow management system 🍐 JointAlexandros Kanterakis P6-10: : The cloud-native Galaxy: Galaxy on Kubernetes 🌀 JointNuwan Goonasekera • Enis Afgan • Alexandru Mahmoud

14:00 EDT

BOSC West Session 4a: Developer tools & libraries 🍐 BOSCKarsten Hokamp

14:01 EDT

Shesmu: A bioinformatics orchestration tool 🍐 BOSCAndre Masella

14:20 EDT

Biopython Project Update 2020 🍐 BOSCPeter Cock

14:40 EDT

MultiQC updates: Visualising results from common bioinformatics tools 🍐 BOSCPhil Ewels

22:15 EDT

East Keynote 2: How Open Source has Changed the World JointLincoln Stein

01:00 EDT

P2-08: : Deep-EMSCAN: Deep Learning Approach to Recover Combination of Biologically Significant DNA Motifs 🍐 JointSonika Tyagi

03:15 EDT

BoF: Galaxy-India: Launch and Outreach Plans JointHarpreet Singh • Anshu Bhardwaj

09:00 EDT

BoF: Galaxy and Kubernetes JointNuwan Goonasekera • Enis Afgan • Alexandru Mahmoud

10:00 EDT

BCC2020 Conference Day 3: West Joint BOSC West Session 5: Workflow management systems 🍐 BOSCPeter Cock Galaxy West Session 5: Galaxy beyond genomics 🌀 GalaxyYvan Le Bras

10:01 EDT

Evolution of the Nextflow workflow management system 🍐 BOSCEvan Floden

10:15 EDT

What’s new with nf-core: community-built bioinformatics pipelines 🍐 BOSCPhil Ewels

10:45 EDT

Democratizing DIA analysis on public cloud infrastructures via Galaxy 🌀 GalaxyMatthias Fahrner

10:50 EDT

Rapidly creating portable pipelines with aCLImatise 🍐 BOSCMichael Milton

10:55 EDT

The all-new Genomics Virtual Lab 🍐 BOSCEnis Afgan

11:30 EDT

P2-06: : CWL-Airflow: a lightweight pipeline manager supporting Common Workflow Language 🍐 JointMichael Kotliar P2-09: : Democratizing DIA analysis on public cloud infrastructures via Galaxy 🌀 JointMatthias Fahrner P3-08: : Evolution of the Nextflow workflow management system 🍐 JointEvan Floden P7-04: : What’s new with nf-core: community-built bioinformatics pipelines 🍐 JointPhil Ewels

12:31 EDT

Serratus: Ultra-deep search for novel coronaviruses 🍐 JointArtem Babaian

14:00 EDT

West Keynote 3: Biased by Default: Exploring Discrimination in Research Code JointAbigail Cabunoc Mayes

14:45 EDT

Closing remarks JointDave Clements • Nomi Harris • Peter Cock • Michael Heuer • Frederik Coppens

15:15 EDT

Birds of a Feather (BOFs) Joint

04:15 EDT

CollaborationFest: Core Joint

01:00 EDT

CollaborationFest: Encore Joint

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