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➞ Registration closed July 15.

BCC2020 is online, global, and affordable. The meeting and training are now done, and the CoFest is under way.

The 2020 Bioinformatics Community Conference brings together the Bioinformatics Open Source Conference (BOSC) and the Galaxy Community Conference into a single event featuring training, a meeting, and a CollaborationFest. Events run from July 17 through July 25, and is held in both the eastern and western hemispheres.

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Category: Poster-Demo [clear filter]
Sunday, July 19
 

13:00 EDT

Broad Institute Data Sciences Platform Sponsor Table JointGeraldine Van der Auwera eLife Innovation Sponsor Table JointEmmy Tsang GigaScience Sponsor Table JointLaurie Goodman • Ken Cho • Scott Edmunds P1-03: : A somatic variant-calling pipeline for the support of molecular tumor boards at German university hospitals 🍐 JointWolfgang Maier • Patrick Metzger P1-07: : Automating the annotation of biological data through semantic technologies and machine learning 🍐 JointLorcΓ‘n Pigott-Dix P1-08: : BioThings Explorer: A platform for distributed knowledge integration across biomedical APIs 🍐 JointJiwen Xin P1-10: : BLAST in a container 🍐 JointTom Madden P2-10: : Deploying Galaxy workflows in containers πŸŒ€ JointBert Droesbeke P3-01: : Earth System Modelling and data analysis with Galaxy Climate Science Workbench πŸŒ€ JointAnne Fouilloux P3-04: : Enabling computational workflows with Tripal and Galaxy πŸŒ€ JointSean Buehler P3-09: : Exploring chromatogram library-based data independent acquisition analysis using EncyclopeDIA within Galaxy framework πŸŒ€ JointPratik Jagtap P3-10: : Extensions of READemption for the analysis of several RNA-seq based protocols 🍐 JointTill Sauerwein P3-12: : Full-factorial examination of high-throughput microbiome sequencing workflows from sample preparation to bioinformatic analysis 🍐 JointTravis J. De Wolfe P4-06: : GraphClust2: a galaxy-based solution for clustering RNA sequences to discover conserved and common secondary structures πŸŒ€ JointMilad Miladi P4-07: : GVL Demo: from Administrators to End-users πŸŒ€ JointNuwan Goonasekera P5-04: : Magic-BLAST an accurate RNA-seq mapper 🍐 JointGrzegorz Boratyn P5-07: : Open-Source, Large-Scale Set Similarity Search with Sketch 🍐 JointDaniel Baker P5-10: : Planet Microbe: Toward the reintegration of oceanographic β€˜omics dataset in their environmental and physiochemical context 🍐 JointAlise Jany Ponsero P5-12: : Progerin expression induces a significant downregulation of transcription from human repetitive sequences in iPSC-derived dopaminergic neurons πŸŒ€ JointWalter Arancio P6-01: : pyGenomeTracks: Reproducible plots for multivariate genomic data sets 🍐 JointLucille Lopez-Delisle P6-02: : Reproducible, collaborative and exploratory data analysis using CyVerse VICE 🍐 JointReetu Tuteja P6-03: : Running and sharing the ENCODE atac-seq pipeline on Truwl 🍐 JointKarl Sebby P6-04: : SigBio-Shiny: A standalone interactive application for detecting biological significance on a set of genes 🍐 JointSangram Keshari Sahu P6-08: : Targeted nanopore sequencing by real-time mapping of raw electrical signal with UNCALLED 🍐 JointSam Kovaka P6-12: : Towards more FAIR research software 🍐 JointMateusz Kuzak Poster / Demo West Session 1 Joint
 
Monday, July 20
 

01:00 EDT

13:00 EDT

eLife Innovation Sponsor Table JointEmmy Tsang GigaScience Sponsor Table JointKen Cho • Scott Edmunds • Laurie Goodman P1-05: : Automated generation of training materials from markdown documents πŸŒ€ JointDelphine Lariviere P1-06: : Automated real-time data analysis and visualizations for the SARS-CoV-2/Covid19 portal πŸŒ€ JointMarius van den Beek P1-09: : BioViz Connect: Web application linking CyVerse cloud resources to genomic visualization in the Integrated Genome Browser 🍐 JointNowlan Freese P1-12: : Codeathons as a tool for improving diversity in computer science 🍐 JointAllissa Dillman P2-01: : Community genome annotation integrates with Galaxy via Apollo providing greater integration and more functional annotation options πŸŒ€ JointNathan Dunn P2-05: : CrowdGO: a wisdom of the crowd-based Gene Ontology prediction tool 🍐 JointMaarten Reijnders P3-03: : EDAM: the ontology of bioinformatics operations, topics, data, and formats (update 2020) 🍐 JointMatΓΊΕ‘ KalaΕ‘ P3-06: : eSPiGA: a population genomic analyses package with graphical interface 🍐 JointSebastian E. Ramos-Onsins P4-01: : Functionally Assembled Terrestrial Ecosystem Simulator (FATES) with Community Land Model in Galaxy πŸŒ€ JointAnne Fouilloux • Hui Tang • Sonya Geange P4-05: : Goslin - A grammar of succinct lipid nomenclature 🍐 JointNils Hoffmann P4-09: : HiSCiAp and Human Cell Atlas Galaxy instance: User-friendly, scalable tools and workflows for single-cell analysis πŸŒ€ JointPablo Moreno P4-11: : Implementation of the IEEE-2791-2020 standard (BioCompute Objects) in Galaxy via workflow invocations πŸŒ€ JointCharles Hadley King P5-01: : Integrating refgenie and Galaxy for reference data management: a proposal for IDC πŸŒ€ JointIgnacio Eguinoa P5-03: : Jasmine: Fast and accurate structural variant comparison across many individuals 🍐 JointMelanie Kirsche P5-08: : OpenBio.eu: An extrovert bioinformatics research object repository and workflow management system 🍐 JointAlexandros Kanterakis P5-09: : Pan-cancer Aberrant Pathway Activity Analysis (PAPAA): A Galaxy Operable Machine Learning-Based Pipeline. πŸŒ€ JointVijay Krishna Nagampalli P6-06: : sRNAflow: a tool for analysis of small RNA-seq data 🍐 JointPawel Zayakin P6-10: : The cloud-native Galaxy: Galaxy on Kubernetes πŸŒ€ JointNuwan Goonasekera • Enis Afgan • Alexandru Mahmoud P7-01: : ViPRA-Haplo: de novo reconstruction of viral populations using paired end sequencing data) 🍐 JointWeiling Li P7-03: : Visualization of gene regulation in endothelial cells that are programmed to human pluripotent stem cells and differentiated to endothelial or neuronal cells 🍐 JointLuke Trinity P7-07: Modern Data Visualization in Galaxy with Higlass πŸŒ€ JointAlex Ostrovsky P7-09: Leveraging machine learning techniques and microbiota data for accessible and reproducible biological classification πŸŒ€ JointJayadev Joshi Poster / Demo West Session 2 Joint
 
Tuesday, July 21
 

01:00 EDT

11:30 EDT

GigaScience Sponsor Table JointKen Cho • Scott Edmunds • Laurie Goodman P1-02: : A data model approach to data coordination in the Human Tumor Atlas Network project 🍐 JointXengie Doan P1-04: : An automated, accessible proteogenomic pipeline for high confidence detection and rigorous validation of novel peptide sequence variants in Galaxy-P πŸŒ€ JointAndrew T Rajcewski P2-03: : COVID-19 PubSeq: Public SARS-CoV-2 Sequence Resource 🍐 JointAndrea Guarracino P2-06: : CWL-Airflow: a lightweight pipeline manager supporting Common Workflow Language 🍐 JointMichael Kotliar P2-09: : Democratizing DIA analysis on public cloud infrastructures via Galaxy πŸŒ€ JointMatthias Fahrner P2-11: : Development of TranSMART and Applications in Biomedical Research 🍐 JointPeter Rice P2-12: : Dnpatterntools suite for nucleosome positioning sequence patterns πŸŒ€ JointErinija Pranckeviciene P3-05: : EOSC-Nordic Climate Science Workbench roadmap πŸŒ€ JointAnne Fouilloux P3-07: : Evaluating customized database generation methods for metaproteomics analysis within the Galaxy platform πŸŒ€ JointSubina Mehta P3-08: : Evolution of the Nextflow workflow management system 🍐 JointEvan Floden P4-02: : Galaxy enables FAIR mass spectrometry imaging data analysis of urothelial carcinoma tissues πŸŒ€ JointMelanie FΓΆll P4-08: : H3AGWAS: Portable GWAS workflows for African science 🍐 JointBrandenburg Jean-Tristan P4-12: : In silico characterization of FK506-binding proteins in wheat πŸŒ€ JointAnantika Suri P5-02: : Introducing App Store for IGB, a site for sharing and installing extensions for Integrated Genome Browser from BioViz.org 🍐 JointAnn Loraine P5-05: : Nebulizer: a command-line utility for remote Galaxy admin tasks πŸŒ€ JointPeter Briggs P5-06: : New features for GRNsight: a web application for visualizing models of small- to medium-scale gene regulatory networks 🍐 JointKam D. Dahlquist P5-11: : Producing biodiversity indicators from citizen science projects: update of birds and bats monitoring schemes on Galaxy-E πŸŒ€ JointColine Royaux P6-05: : SIMD Everywhere: portable implementations of SIMD intrinsics 🍐 JointEvan Nemerson P6-07: : Survey of metaproteomics software tools for functional microbiome analysis πŸŒ€ JointRay Sajulga P6-09: : Testing and investigating deep learning models for promoter recognition 🍐 JointRaul Ivan Perez Martell P6-11: : The Xena Geneset Viewer provides a visual comparison of pathways over public genomic cancer data 🍐 JointNathan Dunn P7-02: : ViralMSA: massively scalable reference-guided multiple sequence alignment of viral genomes 🍐 JointNiema Moshiri P7-04: : What’s new with nf-core: community-built bioinformatics pipelines 🍐 JointPhil Ewels Poster / Demo West Session 3 Joint

23:30 EDT

 
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