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BCC2020

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➞ Registration closed July 15.

BCC2020 is online, global, and affordable. The meeting and training are now done, and the CoFest is under way.

The 2020 Bioinformatics Community Conference brings together the Bioinformatics Open Source Conference (BOSC) and the Galaxy Community Conference into a single event featuring training, a meeting, and a CollaborationFest. Events run from July 17 through July 25, and is held in both the eastern and western hemispheres.

09:00 EDT

West Training 1 Joint

09:01 EDT

Adding Fun(ction) to Microbiome Analysis: Metatranscriptomics and Metaproteomics Workflows in Galaxy Training ETimothy J. Griffin • James Johnson • Saskia Hiltemann • Pratik Jagtap • Subina Mehta Getting started in Git using GitHub Desktop Training AYo Yehudi How to use Reactome data, tools and web services Training BJoel Weiser • Robin Haw • Solomon Shorser • Justin Cook Introduction to Galaxy Administration I Training CThat Other Person • Martin Čech • Nate Coraor • Nicola Soranzo • Helena Rasche Introduction to Using Galaxy Training DDelphine Lariviere • Wolfgang Maier

12:15 EDT

West Training 2 Joint

12:16 EDT

From stars to constellations: Scaling analyses in Galaxy Training DMarius van den Beek • Saskia Hiltemann • Helena Rasche Handling integrated biological data using Python, Jupyter, and InterMine Training Asergio contrino • Yo Yehudi • Rachel Lyne Introduction to Galaxy Administration II Training CThat Other Person • Martin Čech • Nate Coraor • Nicola Soranzo R / Bioconductor in the Cloud Training EMartin Morgan • Nitesh Turaga • Lori Shepherd Scaling genomic analysis with Glow and Apache Spark Training BHenry Davidge • Karen Feng • Rishi Ghose • Michael Shtelma • Frank Nothaft • Kiavash Kianfar • Amir Kermany • Will Brandler

15:30 EDT

West Training 3 Joint

15:31 EDT

Building communities with open source + open science Training AMalvika Sharan • Yo Yehudi Dockstore Fundamentals: Introduction to Docker and Descriptors for Reproducible Analysis Training DLouise Cabansay • Andrew Duncan • Denis Yuen • Gary Lau • Charles Overbeck • Natalie Perez Import, handle, visualize and analyze biodiversity data in Galaxy Training CYvan Le Bras Introduction to Galaxy Administration III Training BThat Other Person • Martin Čech • Nate Coraor Processing of Single Cell RNA-Seq Data with Galaxy Training EBjorn Gruning • Mehmet Tekman • Hans-Rudolf Hotz

21:00 EDT

East Training 1 Joint

21:01 EDT

Command Line Essentials for Bioinformaticians Training EIra Cooke • Wytamma Wirth • Jia Zhang • Legana Fingerhut Dockstore Fundamentals: Introduction to Docker and Descriptors for Reproducible Analysis Training CLouise Cabansay • Andrew Duncan • Denis Yuen How to use Reactome data, tools and web services Training AJoel Weiser • Robin Haw • Solomon Shorser • Justin Cook Introduction to Galaxy Administration I Training DSimon Gladman • Kiran K Telukunta • Nicholas Rhodes • Catherine Bromhead Introduction to Using Galaxy Training BJennifer Hillman-Jackson • Igor Makunin

00:15 EDT

East Training 2 Joint

00:16 EDT

Bionitio: building better bioinformatics tools with batteries included. I Training BAnna Syme • Bernie Pope From stars to constellations: Scaling analyses in Galaxy Training CMaria Doyle • Marius van den Beek Getting started in Git using GitHub Desktop Training AThom Cuddihy Introduction to Galaxy Administration II Training DSimon Gladman • Kiran K Telukunta • Nicholas Rhodes • Catherine Bromhead Produce a portable germline variant-calling pipeline in CWL and WDL using Janis and GATK I Training EMichael Franklin • Richard Lupat

03:30 EDT

East Training 3 Joint

03:31 EDT

Bionitio: building better bioinformatics tools with batteries included II Training BAnna Syme • Bernie Pope Building communities with open source + open science Training AYo Yehudi High-throughput molecular dynamics with Galaxy Training EChris Barnett • Simon Bray • Tharindu Senapathi Import, handle, visualize and analyze biodiversity data in Galaxy Training CYvan Le Bras Introduction to Galaxy Administration III Training DSimon Gladman • Kiran K Telukunta • Nicholas Rhodes • Catherine Bromhead

09:00 EDT

West Training 4 Joint

09:01 EDT

Galaxy Code Architecture Training CJohn Chilton • Nate Coraor How to write a JBrowse 2 plugin Training DColin Diesh • Garrett Stevens Introduction to Machine Learning Training AAlireza Khanteymoori • Anup Kumar RNA-Seq analysis with AskOmics Interactive Tool Training BAnthony Bretaudeau • Xavier Garnier Train the Galaxy Trainer Training ESaskia Hiltemann • Delphine Lariviere • Helena Rasche

12:15 EDT

West Training 5 Joint

12:16 EDT

Building communities with open source + open science Training BMalvika Sharan • Yo Yehudi Embedding JBrowse 2 in your website Training CColin Diesh • Garrett Stevens Getting your hands on Climate data Training EAnne Fouilloux Reference data with CVMFS and remote jobs with Pulsar Training DGianmauro Cuccuru • Nate Coraor • Helena Rasche Scripting Galaxy with BioBlend Training AMarius van den Beek • Dannon Baker • Nicola Soranzo

15:30 EDT

West Training 6 Joint

15:31 EDT

Bioinformatics in Education Training EUwe Hilgert • Isabella Viney Fit your tools into any platform with Bioconda and BioContainers Training AAndrea Giachetti • Loraine Guéguen • Vincenzo Laveglia • Yi Sun Introduction to Nextflow Training CEvan Floden • Paolo Di Tommaso • Kevin Sayers Proteomic data analysis in Galaxy Training DMelanie Föll • Matthias Fahrner Reproducible Analysis in the Cloud with Dockstore and Terra Training BLouise Cabansay • Beth Sheets • Beri Shifaw

21:00 EDT

East Training 4 Joint

21:01 EDT

Galaxies for Crop Science Training EVenice Juanillas • Dmytro Chebotarov • Ken McNally • Ramil Mauleon Galaxy Code Architecture Training AJohn Chilton • Nate Coraor How to write a JBrowse 2 plugin Training DRob Buels • Peter Xie • Scott Cain R / Bioconductor in the Cloud Training BMartin Morgan • Nitesh Turaga • Lori Shepherd Train the Galaxy Trainer Training CGareth Price • Maria Doyle • Simon Gladman

00:15 EDT

East Training 5 Joint

00:16 EDT

Automating Practical Classroom with GitHub Classroom Training CMuhammad Farhan Sjaugi • Abd Rahim Embedding JBrowse 2 in your website Training ARob Buels • Peter Xie • Scott Cain Introduction to RNA-Seq Analysis with Galaxy Training DGareth Price Produce a portable germline variant-calling pipeline in CWL and WDL using Janis and GATK II Training EMichael Franklin • Richard Lupat Reference data with CVMFS and remote jobs with Pulsar Training BSimon Gladman • Catherine Bromhead

03:30 EDT

East Training 6 Joint

03:31 EDT

Getting your hands on Climate data Training BAnne Fouilloux Handling integrated biological data using Python, Jupyter, and InterMine Training DDaniela Butano • Yo Yehudi • Rachel Lyne Introduction to Machine Learning Training EAlireza Khanteymoori • Anup Kumar Processing of Single Cell RNA-Seq Data with Galaxy Training ABjorn Gruning • Mehmet Tekman • Hans-Rudolf Hotz Scripting Galaxy with BioBlend Training CMarius van den Beek • Nuwan Goonasekera • Nicola Soranzo • Clare Sloggett

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