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BCC2020

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➞ Registration closed July 15.

BCC2020 is online, global, and affordable. The meeting and training are now done, and the CoFest is under way.

The 2020 Bioinformatics Community Conference brings together the Bioinformatics Open Source Conference (BOSC) and the Galaxy Community Conference into a single event featuring training, a meeting, and a CollaborationFest. Events run from July 17 through July 25, and is held in both the eastern and western hemispheres.

11:30 EDT

BOSC West Session 1a: Sequencing & analysis 🍐 BOSCChris Fields

11:31 EDT

Digital Expression Explorer 2: a repository of 8 trillion uniformly processed RNA-seq reads and still counting 🍐 BOSCMark Ziemann

11:45 EDT

Targeted nanopore sequencing by real-time mapping of raw electrical signal with UNCALLED 🍐 BOSCSam Kovaka

11:50 EDT

THAPBI PICT -- a metabarcoding analysis pipeline developed as a Phytophthora ITS1 Classification Tool 🍐 BOSCPeter Cock

11:55 EDT

Please contribute to FASTQE so I don’t have to 🍐 BOSCAndrew Lonsdale

12:00 EDT

A reproducible workflow for amplicon-based microbial community analysis using the drake R package 🍐 BOSCRodrigo Ortega-Polo

12:05 EDT

SigBio-Shiny: A standalone interactive application for detecting biological significance on a set of genes 🍐 BOSCSangram Keshari Sahu

12:10 EDT

Streamlining accessibility and computability of large-scale genomic datasets with the NHGRI genome data science Analysis, Visualization, and Informatics Lab-Space (ANVIL) 🍐 BOSCMichael Schatz

12:15 EDT

A comprehensive benchmarking of WGS-based structural variant callers 🍐 BOSCVaruni Sarwal

12:20 EDT

Q&A for session B1a 🍐 BOSCChris Fields

12:24 EDT

BOSC West Session 1b: Open data 🍐 BOSCChris Fields

12:25 EDT

Tripal: an example of successful open-source distributed team development 🍐 BOSCMargaret Staton

12:30 EDT

BioThings Explorer: A platform for distributed knowledge integration across biomedical APIs 🍐 BOSCJiwen Xin

12:35 EDT

Don’t worry about data management - use Cenzontle 🍐 BOSCAsis Hallab

12:40 EDT

Q&A for session B1b 🍐 BOSCChris Fields

14:00 EDT

BOSC West Session 2: Reproducibility and standards 🍐 BOSCMoni Muñoz-Torres • Jessica Maia

14:01 EDT

Bionitio: building better bioinformatics tools with batteries included 🍐 BOSCBernie Pope

14:15 EDT

Enhancing rigor and reproducibility in biomedical research 🍐 BOSCJaqueline J. Brito

14:20 EDT

Secondary analysis of publicly available omics data across almost 3 million publications 🍐 BOSCNicholas Darci-Maher

14:25 EDT

14:30 EDT

CrowdGO: Gene Ontology prediction using a meta approach 🍐 BOSCMaarten Reijnders

14:35 EDT

Goslin - A grammar of succinct lipid nomenclature 🍐 BOSCNils Hoffmann

14:40 EDT

Executable Research Article (ERA): Enrich a research paper with code and data 🍐 BOSCEmmy Tsang

14:55 EDT

23:30 EDT

BOSC East Session 1a: Sequencing & analysis 🍐 BOSCMoni Muñoz-Torres

23:31 EDT

Digital Expression Explorer 2: a repository of 8 trillion uniformly processed RNA-seq reads and still counting 🍐 BOSCMark Ziemann

23:45 EDT

Targeted nanopore sequencing by real-time mapping of raw electrical signal with UNCALLED 🍐 BOSCSam Kovaka

23:50 EDT

THAPBI PICT -- a metabarcoding analysis pipeline developed as a Phytophthora ITS1 Classification Tool 🍐 BOSCPeter Cock

23:55 EDT

Please contribute to FASTQE so I don’t have to 🍐 BOSCAndrew Lonsdale

00:00 EDT

A reproducible workflow for amplicon-based microbial community analysis using the drake R package 🍐 BOSCRodrigo Ortega-Polo

00:05 EDT

SigBio-Shiny: A standalone interactive application for detecting biological significance on a set of genes 🍐 BOSCSangram Keshari Sahu

00:10 EDT

Streamlining accessibility and computability of large-scale genomic datasets with the NHGRI genome data science Analysis, Visualization, and Informatics Lab-Space (ANVIL) 🍐 BOSCMichael Schatz

00:15 EDT

A comprehensive benchmarking of WGS-based structural variant callers 🍐 BOSCVaruni Sarwal

00:20 EDT

Q&A for session B1a 🍐 BOSCMoni Muñoz-Torres

00:25 EDT

Tripal: an example of successful open-source distributed team development 🍐 BOSCMargaret Staton BOSC East Session 1b: Open data 🍐 BOSCMoni Muñoz-Torres

00:30 EDT

BioThings Explorer: A platform for distributed knowledge integration across biomedical APIs 🍐 BOSCJiwen Xin

00:35 EDT

Don’t worry about data management - use Cenzontle 🍐 BOSCAsis Hallab

00:40 EDT

Q&A for session B1b 🍐 BOSCMoni Muñoz-Torres

02:00 EDT

BOSC East Session 2: Reproducibility and standards 🍐 BOSCHeather Wiencko

02:01 EDT

Bionitio: building better bioinformatics tools with batteries included 🍐 BOSCBernie Pope

02:15 EDT

Enhancing rigor and reproducibility in biomedical research 🍐 BOSCJaqueline J. Brito

02:20 EDT

Secondary analysis of publicly available omics data across almost 3 million publications 🍐 BOSCNicholas Darci-Maher

02:25 EDT

Q&A 🍐 BOSCHeather Wiencko

02:30 EDT

CrowdGO: Gene Ontology prediction using a meta approach 🍐 BOSCMaarten Reijnders

02:35 EDT

Goslin - A grammar of succinct lipid nomenclature 🍐 BOSCNils Hoffmann

02:40 EDT

Executable Research Article (ERA): Enrich a research paper with code and data 🍐 BOSCEmmy Tsang

02:55 EDT

Q&A 🍐 BOSCHeather Wiencko

11:15 EDT

BOSC West Session 3: Building Open Source Communities (BOSC) 🍐 BOSCYo Yehudi

11:16 EDT

Building open source communities and empowering new contributors 🍐 BOSCYo Yehudi

11:30 EDT

Codeathons as a tool for improving diversity in computer science 🍐 BOSCAllissa Dillman

11:35 EDT

CyVerse Learning Institute’s foundational open science skills workshop 🍐 BOSCTyson Swetnam

11:40 EDT

Open Life Science: Empowering early career researchers to become open science leaders 🍐 BOSCBérénice Batut • Yo Yehudi • Malvika Sharan

11:55 EDT

Q&A 🍐 BOSCYo Yehudi

14:00 EDT

BOSC West Session 4a: Developer tools & libraries 🍐 BOSCKarsten Hokamp

14:01 EDT

Shesmu: A bioinformatics orchestration tool 🍐 BOSCAndre Masella

14:15 EDT

SIMD Everywhere: portable implementations of SIMD intrinsics 🍐 BOSCEvan Nemerson

14:20 EDT

Biopython Project Update 2020 🍐 BOSCPeter Cock

14:25 EDT

Q&A for session B4a 🍐 BOSCKarsten Hokamp

14:29 EDT

BOSC West Session 4b: Visualization 🍐 BOSCKarsten Hokamp

14:30 EDT

Introducing App Store for IGB, a site for sharing and installing extensions for Integrated Genome Browser from BioViz.org 🍐 BOSCAnn Loraine

14:35 EDT

pyGenomeTracks: Reproducible plots for multivariate genomic data sets 🍐 BOSCLucille Delisle

14:40 EDT

MultiQC updates: Visualising results from common bioinformatics tools 🍐 BOSCPhil Ewels

14:45 EDT

The Xena Geneset Viewer provides a visual comparison of pathways over public genomic cancer data 🍐 BOSCNathan Dunn

14:50 EDT

New features for GRNsight: a web application for visualizing models of small- to medium-scale gene regulatory networks 🍐 BOSCKam D. Dahlquist

14:55 EDT

Q&A for session B4b 🍐 BOSCKarsten Hokamp

23:15 EDT

BOSC East Session 3: Building Open Source Communities (BOSC) 🍐 BOSCNomi Harris

23:16 EDT

Building open source communities and empowering new contributors 🍐 BOSCYo Yehudi

23:30 EDT

Codeathons as a tool for improving diversity in computer science 🍐 BOSCAllissa Dillman

23:35 EDT

CyVerse Learning Institute’s foundational open science skills workshop 🍐 BOSCTyson Swetnam

23:40 EDT

Open Life Science: Empowering early career researchers to become open science leaders 🍐 BOSCBérénice Batut • Yo Yehudi • Malvika Sharan

23:55 EDT

Q&A 🍐 BOSCNomi Harris

02:00 EDT

BOSC East Session 4a: Developer tools & libraries 🍐 BOSCHeather Wiencko

02:01 EDT

Shesmu: A bioinformatics orchestration tool 🍐 BOSCAndre Masella

02:15 EDT

SIMD Everywhere: portable implementations of SIMD intrinsics 🍐 BOSCEvan Nemerson

02:20 EDT

Biopython Project Update 2020 🍐 BOSCPeter Cock

02:25 EDT

Q&A for session B4a 🍐 BOSCHeather Wiencko

02:30 EDT

Introducing App Store for IGB, a site for sharing and installing extensions for Integrated Genome Browser from BioViz.org 🍐 BOSCAnn Loraine BOSC East Session 4b: Visualization 🍐 BOSCHeather Wiencko

02:35 EDT

pyGenomeTracks: Reproducible plots for multivariate genomic data sets 🍐 BOSCLucille Delisle

02:40 EDT

MultiQC updates: Visualising results from common bioinformatics tools 🍐 BOSCPhil Ewels

02:45 EDT

The Xena Geneset Viewer provides a visual comparison of pathways over public genomic cancer data 🍐 BOSCNathan Dunn

02:50 EDT

New features for GRNsight: a web application for visualizing models of small- to medium-scale gene regulatory networks 🍐 BOSCKam D. Dahlquist

02:55 EDT

Q&A for session B4b 🍐 BOSCHeather Wiencko

10:00 EDT

BOSC West Session 5: Workflow management systems 🍐 BOSCPeter Cock

10:01 EDT

Evolution of the Nextflow workflow management system 🍐 BOSCEvan Floden

10:15 EDT

What’s new with nf-core: community-built bioinformatics pipelines 🍐 BOSCPhil Ewels

10:20 EDT

H3AGWAS: Portable GWAS workflows for African science 🍐 BOSCBrandenburg Jean-Tristan

10:25 EDT

Q&A 🍐 BOSCPeter Cock

10:30 EDT

CWL-Airflow: a lightweight pipeline manager supporting Common Workflow Language 🍐 BOSCMichael Kotliar

10:45 EDT

Challenges in implementing Janis: A generator for CWL and WDL pipelines 🍐 BOSCMichael Franklin

10:50 EDT

Rapidly creating portable pipelines with aCLImatise 🍐 BOSCMichael Milton

10:55 EDT

The all-new Genomics Virtual Lab 🍐 BOSCThe Other Enis Afgan

11:10 EDT

Q&A 🍐 BOSCPeter Cock

22:00 EDT

BOSC East Session 5: Workflow management systems 🍐 BOSCChris Fields

22:01 EDT

Evolution of the Nextflow workflow management system 🍐 BOSCEvan Floden

22:15 EDT

What’s new with nf-core: community-built bioinformatics pipelines 🍐 BOSCPhil Ewels

22:20 EDT

H3AGWAS: Portable GWAS workflows for African science 🍐 BOSCBrandenburg Jean-Tristan

22:25 EDT

Q&A 🍐 BOSCChris Fields

22:30 EDT

CWL-Airflow: a lightweight pipeline manager supporting Common Workflow Language 🍐 BOSCMichael Kotliar

22:45 EDT

Challenges in implementing Janis: A generator for CWL and WDL pipelines 🍐 BOSCMichael Franklin

22:50 EDT

Rapidly creating portable pipelines with aCLImatise 🍐 BOSCMichael Milton

22:55 EDT

The all-new Genomics Virtual Lab 🍐 BOSCThe Other Enis Afgan

23:10 EDT

Q&A 🍐 BOSCChris Fields

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