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➞ Registration closed July 15.

BCC2020 is online, global, and affordable. The meeting and training are now done, and the CoFest is under way.

The 2020 Bioinformatics Community Conference brings together the Bioinformatics Open Source Conference (BOSC) and the Galaxy Community Conference into a single event featuring training, a meeting, and a CollaborationFest. Events run from July 17 through July 25, and is held in both the eastern and western hemispheres.

WK

Wai-Yin Kwan

NA
software engineer
Thursday, July 16
 

11:00 EDT

Pre-BCC Open House! West
 
Friday, July 17
 

03:00 EDT

Pre-BCC Open House! East

09:01 EDT

Introduction to Using Galaxy Training DDelphine Lariviere • Wolfgang Maier

12:16 EDT

R / Bioconductor in the Cloud Training EMartin Morgan • Nitesh Turaga • Lori Shepherd

15:31 EDT

Import, handle, visualize and analyze biodiversity data in Galaxy Training CYvan Le Bras
 
Saturday, July 18
 

09:01 EDT

Introduction to Machine Learning Training AAlireza Khanteymoori • Anup Kumar

12:16 EDT

Getting your hands on Climate data Training EAnne Fouilloux

15:31 EDT

Bioinformatics in Education Training EUwe Hilgert • Isabella Viney
 
Sunday, July 19
 

10:01 EDT

Welcome JointDave Clements • Nomi Harris

10:30 EDT

West Keynote 1: How Open Source has Changed the World JointLincoln Stein

11:30 EDT

BOSC West Session 1a: Sequencing & analysis 🍐 BOSCChris Fields Galaxy West Session 1: Applications and use cases πŸŒ€ GalaxyDelphine Lariviere

11:45 EDT

Targeted nanopore sequencing by real-time mapping of raw electrical signal with UNCALLED 🍐 BOSCSam Kovaka

11:50 EDT

THAPBI PICT -- a metabarcoding analysis pipeline developed as a Phytophthora ITS1 Classification Tool 🍐 BOSCPeter Cock

11:55 EDT

Please contribute to FASTQE so I don’t have to 🍐 BOSCAndrew Lonsdale

12:00 EDT

A reproducible workflow for amplicon-based microbial community analysis using the drake R package 🍐 BOSCRodrigo Ortega-Polo

12:05 EDT

SigBio-Shiny: A standalone interactive application for detecting biological significance on a set of genes 🍐 BOSCSangram Keshari Sahu

12:10 EDT

Integrating and analyzing genotype, phenotype, and environmental data through CartograTree and Tripal Galaxy πŸŒ€ GalaxyIrene Cobo

12:20 EDT

Q&A for session B1a 🍐 BOSCChris Fields

12:24 EDT

BOSC West Session 1b: Open data 🍐 BOSCChris Fields

12:25 EDT

Automated real-time data analysis and visualizations for the SARS-CoV-2/Covid19 portal πŸŒ€ GalaxyMarius van den Beek

12:35 EDT

Don’t worry about data management - use Cenzontle 🍐 BOSCAsis Hallab

13:00 EDT

P1-07: : Automating the annotation of biological data through semantic technologies and machine learning 🍐 JointLorcΓ‘n Pigott-Dix P1-08: : BioThings Explorer: A platform for distributed knowledge integration across biomedical APIs 🍐 JointJiwen Xin P1-10: : BLAST in a container 🍐 JointTom Madden P3-01: : Earth System Modelling and data analysis with Galaxy Climate Science Workbench πŸŒ€ JointAnne Fouilloux P3-04: : Enabling computational workflows with Tripal and Galaxy πŸŒ€ JointSean Buehler P3-12: : Full-factorial examination of high-throughput microbiome sequencing workflows from sample preparation to bioinformatic analysis 🍐 JointTravis J. De Wolfe P5-07: : Open-Source, Large-Scale Set Similarity Search with Sketch 🍐 JointDaniel Baker P5-10: : Planet Microbe: Toward the reintegration of oceanographic β€˜omics dataset in their environmental and physiochemical context 🍐 JointAlise Jany Ponsero P6-01: : pyGenomeTracks: Reproducible plots for multivariate genomic data sets 🍐 JointLucille Lopez-Delisle P6-02: : Reproducible, collaborative and exploratory data analysis using CyVerse VICE 🍐 JointReetu Tuteja P6-12: : Towards more FAIR research software 🍐 JointMateusz Kuzak

14:00 EDT

BOSC West Session 2: Reproducibility and standards 🍐 BOSCMoni MuΓ±oz-Torres • Jessica Maia

14:01 EDT

Automated generation of training materials from markdown documents πŸŒ€ GalaxyDelphine Lariviere

14:15 EDT

Enhancing rigor and reproducibility in biomedical research 🍐 BOSCJaqueline J. Brito

14:20 EDT

Secondary analysis of publicly available omics data across almost 3 million publications 🍐 BOSCNicholas Darci-Maher

14:40 EDT

Executable Research Article (ERA): Enrich a research paper with code and data 🍐 BOSCEmmy Tsang
 
Monday, July 20
 

10:15 EDT

West Keynote 2: Open minds bring open collaborations JointPrashanth N Suravajhala

11:15 EDT

BOSC West Session 3: Building Open Source Communities (BOSC) 🍐 BOSCYo Yehudi

11:16 EDT

Building open source communities and empowering new contributors 🍐 BOSCYo Yehudi

11:30 EDT

Codeathons as a tool for improving diversity in computer science 🍐 BOSCAllissa Dillman

11:35 EDT

CyVerse Learning Institute’s foundational open science skills workshop 🍐 BOSCTyson Swetnam

11:40 EDT

Open Life Science: Empowering early career researchers to become open science leaders 🍐 BOSCBΓ©rΓ©nice Batut • Yo Yehudi • Malvika Sharan

12:40 EDT

Software Sustainability Institute Gold Sponsor Talk: Most code is cr#p and that’s okay JointNeil Chue Hong

13:00 EDT

P1-05: : Automated generation of training materials from markdown documents πŸŒ€ JointDelphine Lariviere P1-09: : BioViz Connect: Web application linking CyVerse cloud resources to genomic visualization in the Integrated Genome Browser 🍐 JointNowlan Freese P1-12: : Codeathons as a tool for improving diversity in computer science 🍐 JointAllissa Dillman P3-03: : EDAM: the ontology of bioinformatics operations, topics, data, and formats (update 2020) 🍐 JointMatΓΊΕ‘ KalaΕ‘ P3-06: : eSPiGA: a population genomic analyses package with graphical interface 🍐 JointSebastian E. Ramos-Onsins P7-09: Leveraging machine learning techniques and microbiota data for accessible and reproducible biological classification πŸŒ€ JointJayadev Joshi

14:00 EDT

BOSC West Session 4a: Developer tools & libraries 🍐 BOSCKarsten Hokamp

14:01 EDT

Shesmu: A bioinformatics orchestration tool 🍐 BOSCAndre Masella

14:15 EDT

SIMD Everywhere: portable implementations of SIMD intrinsics 🍐 BOSCEvan Nemerson

14:20 EDT

Biopython Project Update 2020 🍐 BOSCPeter Cock

14:30 EDT

Introducing App Store for IGB, a site for sharing and installing extensions for Integrated Genome Browser from BioViz.org 🍐 BOSCAnn Loraine

14:35 EDT

pyGenomeTracks: Reproducible plots for multivariate genomic data sets 🍐 BOSCLucille Lopez-Delisle

14:40 EDT

MultiQC updates: Visualising results from common bioinformatics tools 🍐 BOSCPhil Ewels

14:45 EDT

The Xena Geneset Viewer provides a visual comparison of pathways over public genomic cancer data 🍐 BOSCNathan Dunn

14:50 EDT

New features for GRNsight: a web application for visualizing models of small- to medium-scale gene regulatory networks 🍐 BOSCKam D. Dahlquist

15:15 EDT

BoF: Computational Biology in the Cloud JointLydia Fleischmann • Yuriy Skripchenko
 
Tuesday, July 21
 

10:00 EDT

BOSC West Session 5: Workflow management systems 🍐 BOSCPeter Cock

10:02 EDT

Producing biodiversity indicators from citizen science projects: update of birds and bats monitoring schemes on Galaxy-E πŸŒ€ GalaxyColine Royaux

10:15 EDT

What’s new with nf-core: community-built bioinformatics pipelines 🍐 BOSCPhil Ewels

10:55 EDT

The all-new Genomics Virtual Lab 🍐 BOSCEnis Afgan

11:30 EDT

P1-02: : A data model approach to data coordination in the Human Tumor Atlas Network project 🍐 JointXengie Doan P2-06: : CWL-Airflow: a lightweight pipeline manager supporting Common Workflow Language 🍐 JointMichael Kotliar P3-05: : EOSC-Nordic Climate Science Workbench roadmap πŸŒ€ JointAnne Fouilloux P4-08: : H3AGWAS: Portable GWAS workflows for African science 🍐 JointBrandenburg Jean-Tristan P5-02: : Introducing App Store for IGB, a site for sharing and installing extensions for Integrated Genome Browser from BioViz.org 🍐 JointAnn Loraine P5-06: : New features for GRNsight: a web application for visualizing models of small- to medium-scale gene regulatory networks 🍐 JointKam D. Dahlquist P5-11: : Producing biodiversity indicators from citizen science projects: update of birds and bats monitoring schemes on Galaxy-E πŸŒ€ JointColine Royaux P6-11: : The Xena Geneset Viewer provides a visual comparison of pathways over public genomic cancer data 🍐 JointNathan Dunn

12:31 EDT

Serratus: Ultra-deep search for novel coronaviruses 🍐 JointArtem Babaian

12:45 EDT

MALVIRUS: viral variant calling made easy 🍐 JointYuri Pirola

12:50 EDT

Development of TranSMART and Applications in Biomedical Research 🍐 JointPeter Rice

13:05 EDT

COVID-19 PubSeq: Public SARS-CoV-2 Sequence Resource 🍐 JointAndrea Guarracino

13:10 EDT

Designing and executing workflows for virtual screening of the SARS-CoV-2 main protease 🍐 JointSimon Bray

14:00 EDT

West Keynote 3: Biased by Default: Exploring Discrimination in Research Code JointAbigail Cabunoc Mayes

14:45 EDT

Closing remarks JointDave Clements • Nomi Harris • Peter Cock • Michael Heuer • Frederik Coppens

15:15 EDT

BoF: Dynamic Visualization of Bioinformatic Data JointNathan Dunn • Rob Buels • Colin Diesh
 
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